RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 VCX3BQ9H321 246 aa21.46■■□□□ 1.03
CTCF-202ENST00000401394 VCX3AQ9NNX9 186 aa21.46■■□□□ 1.03
CTCF-202ENST00000401394 DPP3Q9NY33 737 aa21.46■■□□□ 1.03
CTCF-202ENST00000401394 LCTP09848 1927 aa21.46■■□□□ 1.03
CTCF-202ENST00000401394 ICAM3P32942 547 aa21.46■■□□□ 1.03
CTCF-202ENST00000401394 FAM160B1Q5W0V3 765 aa21.46■■□□□ 1.03
CTCF-202ENST00000401394 PCDHAC1Q9H158 963 aa21.46■■□□□ 1.03
CTCF-202ENST00000401394 CDH19Q9H159 772 aa21.46■■□□□ 1.03
CTCF-202ENST00000401394 GNEQ9Y223 722 aaKnown RBP21.46■■□□□ 1.03
CTCF-202ENST00000401394 A0A096LPK6 155 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 ASLP04424 464 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 IGFBP6P24592 240 aaPredicted RBP21.45■■□□□ 1.03
CTCF-202ENST00000401394 FLOT2Q14254 428 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 MXD4Q14582 209 aaPredicted RBP21.45■■□□□ 1.03
CTCF-202ENST00000401394 R3HDM1Q15032 1099 aaKnown RBP21.45■■□□□ 1.03
CTCF-202ENST00000401394 OGFRL1Q5TC84 451 aaPredicted RBP21.45■■□□□ 1.03
CTCF-202ENST00000401394 ZNF567Q8N184 647 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 OR6B3Q8NGW1 331 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 KIF12Q96FN5 646 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 SPATA33Q96N06 139 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 ZMAT2Q96NC0 199 aaKnown RBP21.45■■□□□ 1.03
CTCF-202ENST00000401394 QKIQ96PU8 341 aaKnown RBP eCLIP21.45■■□□□ 1.03
CTCF-202ENST00000401394 ZNF670Q9BS34 389 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 PDZD7Q9H5P4 517 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 TCF7L2Q9NQB0 619 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 DNAJC28Q9NX36 388 aa21.45■■□□□ 1.03
CTCF-202ENST00000401394 ALDH1A2O94788 518 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 MT-CO1P00395 513 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 TMEM132DQ14C87 1099 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 ZNF280DQ6N043 979 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 PCDH20Q8N6Y1 951 aaKnown RBP21.45■■□□□ 1.02
CTCF-202ENST00000401394 FAM149B1Q96BN6 582 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 LRRC39Q96DD0 335 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 PRDM12Q9H4Q4 367 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 DCDC2Q9UHG0 476 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 ZDHHC2Q9UIJ5 367 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 A0A0A0MRY4 1105 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 FAM72CH0Y354 149 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 TPSB2P20231 275 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 BAG6P46379 1132 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 HARS2P49590 506 aaKnown RBP21.45■■□□□ 1.02
CTCF-202ENST00000401394 TPSAB1Q15661 275 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 FAM72AQ5TYM5 149 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 FAM72DQ6L9T8 149 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 PID1Q7Z2X4 250 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 FAM72BQ86X60 149 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 SLC35F5Q8WV83 523 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 CERS2Q96G23 380 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 SPATA13Q96N96 652 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 OLFM3Q96PB7 478 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 CHRAC1Q9NRG0 131 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 TUBGCP4Q9UGJ1 667 aa21.45■■□□□ 1.02
CTCF-202ENST00000401394 ANK1P16157 1881 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 P4HA1P13674 534 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 GMPSP49915 693 aaPredicted RBP21.44■■□□□ 1.02
CTCF-202ENST00000401394 NME3Q13232 169 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 METTL7BQ6UX53 244 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 SNX10Q9Y5X0 201 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 NUP205Q92621 2012 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 FOXD2O60548 495 aaPredicted RBP21.44■■□□□ 1.02
CTCF-202ENST00000401394 NDUFV1P49821 464 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 NAGLUP54802 743 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 CPNE9Q8IYJ1 553 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 ARHGAP18Q8N392 663 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 RAB3IL1Q8TBN0 382 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 CDKL2Q92772 493 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 SLC39A10Q9ULF5 831 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 AKT3Q9Y243 479 aa21.44■■□□□ 1.02
CTCF-202ENST00000401394 C2P06681 752 aa21.43■■□□□ 1.02
CTCF-202ENST00000401394 SESTD1Q86VW0 696 aa21.43■■□□□ 1.02
CTCF-202ENST00000401394 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.43■■□□□ 1.02
CTCF-202ENST00000401394 PPP1R1BQ9UD71 204 aaPredicted RBP21.43■■□□□ 1.02
CTCF-202ENST00000401394 RNASEH2AO75792 299 aaKnown RBP21.43■■□□□ 1.02
CTCF-202ENST00000401394 DPYSL2Q16555 572 aa21.43■■□□□ 1.02
CTCF-202ENST00000401394 ARL13AQ5H913 290 aaPredicted RBP21.43■■□□□ 1.02
CTCF-202ENST00000401394 STEAP4Q687X5 459 aa21.43■■□□□ 1.02
CTCF-202ENST00000401394 ATP6V1E2Q96A05 226 aa21.43■■□□□ 1.02
CTCF-202ENST00000401394 LRGUKQ96M69 825 aa21.43■■□□□ 1.02
CTCF-202ENST00000401394 PCDHB12Q9Y5F1 795 aa21.43■■□□□ 1.02
CTCF-202ENST00000401394 TLL2Q9Y6L7 1015 aa21.43■■□□□ 1.02
CTCF-202ENST00000401394 CEP70Q8NHQ1 597 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 ANLNQ9NQW6 1124 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 TNFSF13BQ9Y275 285 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 SIP14410 1827 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 IGKV6-21A0A0C4DH24 114 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 PIGNO95427 931 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 RALGDSQ12967 914 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 DNAAF3Q8N9W5 541 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 SNRNP27Q8WVK2 155 aaKnown RBP21.42■■□□□ 1.02
CTCF-202ENST00000401394 MRPL1Q9BYD6 325 aaKnown RBP21.42■■□□□ 1.02
CTCF-202ENST00000401394 SENP6Q9GZR1 1112 aaPredicted RBP21.42■■□□□ 1.02
CTCF-202ENST00000401394 CACNG4Q9UBN1 327 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 PSMD13Q9UNM6 376 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 SORCS3Q9UPU3 1222 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 TMX2-CTNND1H3BSU7 103 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 XPO1O14980 1071 aaKnown RBP21.42■■□□□ 1.02
CTCF-202ENST00000401394 MDM4O15151 490 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 SBK3P0C264 359 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 PGAM1P18669 254 aa21.42■■□□□ 1.02
CTCF-202ENST00000401394 EPHX2P34913 555 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms