RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 OLFM2O95897 454 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SPATA31D3P0C874 917 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MYBL1P10243 752 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 CYP2A6P11509 494 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SFTPCP11686 197 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 NFKBIAP25963 317 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 HOXA11P31270 313 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 GUCY1A2P33402 732 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 RFC1P35251 1148 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SREBF1P36956 1147 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 PPARGP37231 505 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 CASRP41180 1078 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 AVPR1BP47901 424 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 STARD6P59095 220 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 POU6F2P78424 691 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MRPS5P82675 430 aaKnown RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MAP2K1Q02750 393 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 YWHAHQ04917 246 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 IFT88Q13099 833 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 CAMK2DQ13557 499 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SLC29A2Q14542 456 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 NAA25Q14CX7 972 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MORF4L2Q15014 288 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 TYSND1Q2T9J0 566 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 PLAG1Q6DJT9 500 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 ABHD15Q6UXT9 468 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SPATA31D4Q6ZUB0 917 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 DOK3Q7L591 496 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 ADGRF2Q8IZF7 708 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 PQLC1Q8N2U9 271 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 LCORLQ8N3X6 602 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 ZBTB44Q8NCP5 570 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 PIK3C3Q8NEB9 887 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 LINS1Q8NG48 757 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 ZFAND2BQ8WV99 257 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SYAP1Q96A49 352 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SLC22A18Q96BI1 424 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MYEOVQ96EZ4 313 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 PIP5K1AQ99755 562 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 C1orf21Q9H246 121 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 TTYH1Q9H313 450 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 VEZTQ9HBM0 779 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 MID1IP1Q9NPA3 183 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 NRIP3Q9NQ35 241 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 TRPM5Q9NZQ8 1165 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 CPSF2Q9P2I0 782 aaKnown RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SUCLA2Q9P2R7 463 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SLCO3A1Q9UIG8 710 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 SARDHQ9UL12 918 aa4.35□□□□□ -1.71
HMGB1-204ENST00000399489 GLOD5A6NK44 160 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 SAC3D1A6NKF1 404 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 DIRC3C9JPN6 131 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 J3KTA2 159 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 PEX12O00623 359 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 DHHO43323 396 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 EXOC3O60645 756 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 LY86O95711 162 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 FTCDO95954 541 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 CCDC175P0C221 793 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 ARP10275 920 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 CPT2P23786 658 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 PCSK1P29120 753 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 MTHFRP42898 656 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 CAPZA2P47755 286 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 CPT1AP50416 773 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 UCP3P55916 312 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 CTXN1P60606 82 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 EIF4A1P60842 406 aaKnown RBP4.34□□□□□ -1.71
HMGB1-204ENST00000399489 NOMO3P69849 1222 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 CD69Q07108 199 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 COX10Q12887 443 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 MRPL28Q13084 256 aaKnown RBP4.34□□□□□ -1.71
HMGB1-204ENST00000399489 SHROOM1Q2M3G4 852 aaPredicted RBP4.34□□□□□ -1.71
HMGB1-204ENST00000399489 ERCC6LQ2NKX8 1250 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 RAB41Q5JT25 222 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 MPP7Q5T2T1 576 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 LIPMQ5VYY2 423 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 SUSD1Q6UWL2 747 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 ZDHHC24Q6UX98 284 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 OTOAQ7RTW8 1153 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 VRK3Q8IV63 474 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 DPP10Q8N608 796 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 OR52N2Q8NGI0 321 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 ATP6V0A1Q93050 837 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 FER1L6-AS2Q96M78 137 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 SPXQ9BT56 116 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 MLST8Q9BVC4 326 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 TEX12Q9BXU0 123 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 ENKD1Q9H0I2 346 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 TOR3AQ9H497 397 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 ST6GALNAC4Q9H4F1 302 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 SMARCAD1Q9H4L7 1026 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 RMI1Q9H9A7 625 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 BCO1Q9HAY6 547 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 LTB4R2Q9NPC1 389 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 SEMA4BQ9NPR2 832 aaPredicted RBP4.34□□□□□ -1.71
HMGB1-204ENST00000399489 FSCN3Q9NQT6 498 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 PCDHB16Q9NRJ7 776 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 PTGFRNQ9P2B2 879 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 ZNF624Q9P2J8 865 aaPredicted RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms