RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 ZNF605Q86T29 641 aa16.67■□□□□ 0.26
CUX2-202ENST00000397643 SPACA3Q8IXA5 215 aa16.67■□□□□ 0.26
CUX2-202ENST00000397643 SPATA20Q8TB22 786 aa16.67■□□□□ 0.26
CUX2-202ENST00000397643 ERCC4Q92889 916 aaPredicted RBP16.67■□□□□ 0.26
CUX2-202ENST00000397643 PTPRN2Q92932 1015 aa16.67■□□□□ 0.26
CUX2-202ENST00000397643 FCRL2Q96LA5 508 aaPredicted RBP16.67■□□□□ 0.26
CUX2-202ENST00000397643 NUCKS1Q9H1E3 243 aaKnown RBP16.67■□□□□ 0.26
CUX2-202ENST00000397643 ARHGAP20Q9P2F6 1191 aa16.67■□□□□ 0.26
CUX2-202ENST00000397643 HESX1Q9UBX0 185 aa16.67■□□□□ 0.26
CUX2-202ENST00000397643 SLCO3A1Q9UIG8 710 aa16.67■□□□□ 0.26
CUX2-202ENST00000397643 COQ4Q9Y3A0 265 aa16.67■□□□□ 0.26
CUX2-202ENST00000397643 ADH1BP00325 375 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 FYNP06241 537 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 CD19P15391 556 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 C5AR1P21730 350 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 GLDCP23378 1020 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 ACP1P24666 158 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 MZF1P28698 734 aaPredicted RBP16.66■□□□□ 0.26
CUX2-202ENST00000397643 RGS7P49802 495 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 METAP1P53582 386 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 CCDC173Q0VFZ6 552 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 MS4A13Q5J8X5 152 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 NAPEPLDQ6IQ20 393 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 PMF1Q6P1K2 205 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 SND1Q7KZF4 910 aaKnown RBP eCLIP16.66■□□□□ 0.26
CUX2-202ENST00000397643 STK40Q8N2I9 435 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 CARNMT1Q8N4J0 409 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 OXR1Q8N573 874 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 MFSD2AQ8NA29 543 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 OR14C36Q8NHC7 312 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 CLEC4CQ8WTT0 213 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 SLC35F5Q8WV83 523 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 IRGQQ8WZA9 623 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 TFAP2BQ92481 460 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 ZSWIM1Q9BR11 485 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 TMEM63CQ9P1W3 806 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 TPX2Q9ULW0 747 aaKnown RBP16.66■□□□□ 0.26
CUX2-202ENST00000397643 CLCA2Q9UQC9 943 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 DOCK9Q9BZ29 2069 aa16.66■□□□□ 0.26
CUX2-202ENST00000397643 PIK3R2O00459 728 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 TRIM38O00635 465 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 LETM1O95202 739 aaPredicted RBP16.65■□□□□ 0.26
CUX2-202ENST00000397643 LTFP02788 710 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 VDRP11473 427 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 ACTN2P35609 894 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 STK19P49842 368 aaPredicted RBP16.65■□□□□ 0.26
CUX2-202ENST00000397643 CFHR1Q03591 330 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 CDH18Q13634 790 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 EDRF1Q3B7T1 1238 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 DCAF6Q58WW2 860 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 LCLAT1Q6UWP7 414 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 APCDD1Q8J025 514 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 CFAP52Q8N1V2 620 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 SLC39A13Q96H72 371 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 MAN1B1Q9UKM7 699 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 NAV2Q8IVL1 2488 aa16.65■□□□□ 0.26
CUX2-202ENST00000397643 CYSRT1A8MQ03 144 aa16.64■□□□□ 0.25
CUX2-202ENST00000397643 LUC7L3O95232 432 aaKnown RBP16.64■□□□□ 0.25
CUX2-202ENST00000397643 VAV1P15498 845 aa16.64■□□□□ 0.25
CUX2-202ENST00000397643 CXADRP78310 365 aa16.64■□□□□ 0.25
CUX2-202ENST00000397643 ECT2LQ008S8 904 aa16.64■□□□□ 0.25
CUX2-202ENST00000397643 ELAVL3Q14576 367 aaKnown RBP16.64■□□□□ 0.25
CUX2-202ENST00000397643 SLC45A4Q5BKX6 768 aa16.64■□□□□ 0.25
CUX2-202ENST00000397643 IQCHQ86VS3 1027 aa16.64■□□□□ 0.25
CUX2-202ENST00000397643 DQX1Q8TE96 717 aaKnown RBP16.64■□□□□ 0.25
CUX2-202ENST00000397643 RPL10LQ96L21 214 aaKnown RBP16.64■□□□□ 0.25
CUX2-202ENST00000397643 CYTH4Q9UIA0 394 aa16.64■□□□□ 0.25
CUX2-202ENST00000397643 XPO7Q9UIA9 1087 aaKnown RBP16.64■□□□□ 0.25
CUX2-202ENST00000397643 PCDHB1Q9Y5F3 818 aa16.64■□□□□ 0.25
CUX2-202ENST00000397643 TYW5A2RUC4 315 aaKnown RBP16.63■□□□□ 0.25
CUX2-202ENST00000397643 BIN1O00499 593 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 CAPN9O14815 690 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 SIGLEC6O43699 453 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 STX10O60499 249 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 SDC3O75056 442 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 IL1BP01584 269 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 NNTQ13423 1086 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 ZNF658Q5TYW1 1059 aaPredicted RBP16.63■□□□□ 0.25
CUX2-202ENST00000397643 RBM43Q6ZSC3 357 aaKnown RBP16.63■□□□□ 0.25
CUX2-202ENST00000397643 SLC25A45Q8N413 288 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 FRS2Q8WU20 508 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 HIC2Q96JB3 615 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 DDX50Q9BQ39 737 aaKnown RBP16.63■□□□□ 0.25
CUX2-202ENST00000397643 KIAA1257Q9ULG3 409 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 TLR6Q9Y2C9 796 aa16.63■□□□□ 0.25
CUX2-202ENST00000397643 TBC1D3DA0A087WVF3 549 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 TBC1D3IA0A087WXS9 549 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 TBC1D3EA0A087X179 549 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 TBC1D3KA0A087X1G2 549 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 TBC1D3FA6NER0 549 aaPredicted RBP16.62■□□□□ 0.25
CUX2-202ENST00000397643 TBC1D3LB9A6J9 549 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 ERVH48-1M5A8F1 160 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 PLRG1O43660 514 aaKnown RBP16.62■□□□□ 0.25
CUX2-202ENST00000397643 RTN2O75298 545 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 MT-CO3P00414 261 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 TBC1D3HP0C7X1 549 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 EPB41P11171 864 aaKnown RBP16.62■□□□□ 0.25
CUX2-202ENST00000397643 MAT2AP31153 395 aaKnown RBP16.62■□□□□ 0.25
CUX2-202ENST00000397643 KCNH2Q12809 1159 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 OVGP1Q12889 678 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms