RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 TMEM270Q6UE05 265 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 LCLAT1Q6UWP7 414 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 MMS22LQ6ZRQ5 1243 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 SIX6OS1Q8N1H7 587 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.71□□□□□ -0.69
NEDD8-202ENST00000396828 OR2T3Q8NH03 318 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 RNF139Q8WU17 664 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 ADAMTS14Q8WXS8 1223 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 BIRC7Q96CA5 298 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 MYO19Q96H55 970 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 LMLNQ96KR4 655 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 CHP1Q99653 195 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 ORAI3Q9BRQ5 295 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.71□□□□□ -0.69
NEDD8-202ENST00000396828 TM7SF3Q9NS93 570 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 ABCC13Q9NSE7 274 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 ARHGAP20Q9P2F6 1191 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 HESX1Q9UBX0 185 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 GGA2Q9UJY4 613 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 CNTN6Q9UQ52 1028 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 BTBD3Q9Y2F9 522 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 ZKSCAN5Q9Y2L8 839 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 CABIN1Q9Y6J0 2220 aa10.71□□□□□ -0.69
NEDD8-202ENST00000396828 PLXNA2O75051 1894 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 H0Y626 953 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 CCP110O43303 1012 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 TIMM44O43615 452 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 TBL1XO60907 577 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 TRIM16O95361 564 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 SETSIPP0DME0 302 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 C7P10643 843 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 PABPC1P11940 636 aaKnown RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 CYP11B1P15538 503 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 MSNP26038 577 aaKnown RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 CLCN1P35523 988 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 EIF4A3P38919 411 aaKnown RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 NUMBP49757 651 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 KRT83P78385 493 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 SCAPQ12770 1279 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 ZNF423Q2M1K9 1284 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 FSCBQ5H9T9 825 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 E4F1Q66K89 784 aaPredicted RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 MSANTD2Q6P1R3 559 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 DBX2Q6ZNG2 339 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 BAHD1Q8TBE0 780 aaPredicted RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 ADAM32Q8TC27 787 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 SETD7Q8WTS6 366 aaKnown RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 SNX19Q92543 992 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 PRICKLE1Q96MT3 831 aaPredicted RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 MIS12Q9H081 205 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 LHX5Q9H2C1 402 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 LUC7LQ9NQ29 371 aaKnown RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 CNGB3Q9NQW8 809 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 OLA1Q9NTK5 396 aaKnown RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 STIM2Q9P246 746 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 SERGEFQ9UGK8 458 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 XPO7Q9UIA9 1087 aaKnown RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 INTS6Q9UL03 887 aaKnown RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 PCDHB9Q9Y5E1 797 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 SNX11Q9Y5W9 270 aa10.7□□□□□ -0.7
NEDD8-202ENST00000396828 EPN1Q9Y6I3 576 aaPredicted RBP10.7□□□□□ -0.7
NEDD8-202ENST00000396828 ADAMTS20P59510 1910 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 M0QYV0 167 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 ZSCAN12O43309 604 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 MED7O43513 233 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 NDUFA10O95299 355 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 PLEKP08567 350 aaPredicted RBP10.69□□□□□ -0.7
NEDD8-202ENST00000396828 PAEPP09466 180 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 DLDP09622 509 aaKnown RBP10.69□□□□□ -0.7
NEDD8-202ENST00000396828 CCDC175P0C221 793 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 ATXN1LP0C7T5 689 aaKnown RBP10.69□□□□□ -0.7
NEDD8-202ENST00000396828 TNFAIP3P21580 790 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 GNA15P30679 374 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 MATKP42679 507 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 CTSOP43234 321 aaPredicted RBP10.69□□□□□ -0.7
NEDD8-202ENST00000396828 RPS24P62847 133 aaKnown RBP10.69□□□□□ -0.7
NEDD8-202ENST00000396828 CNGA2Q16280 664 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 PRAMEF14Q5SWL7 426 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 RAD9BQ6WBX8 426 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 CCNI2Q6ZMN8 369 aaPredicted RBP10.69□□□□□ -0.7
NEDD8-202ENST00000396828 SLC47A2Q86VL8 602 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 ZSCAN30Q86W11 494 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 PROSER1Q86XN7 944 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 ZNF677Q86XU0 584 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 SCUBE3Q8IX30 993 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 AHI1Q8N157 1196 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 CFAP52Q8N1V2 620 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 SCML4Q8N228 414 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 TXLNBQ8N3L3 684 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 MDM1Q8TC05 714 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 WFIKKN2Q8TEU8 576 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 FCRL2Q96LA5 508 aaPredicted RBP10.69□□□□□ -0.7
NEDD8-202ENST00000396828 MRGPRX3Q96LB0 322 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 AGPAT1Q99943 283 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 ZDHHC5Q9C0B5 715 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 PDCL3Q9H2J4 239 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 EBF2Q9HAK2 575 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 TM9SF3Q9HD45 589 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms