RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 POP1Q99575 1024 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 POMKQ9H5K3 350 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 CATSPERZQ9NTU4 200 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 OPTCQ9UBM4 332 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 FBXL21Q9UKT6 434 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ERVK-24P63145 666 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 XRCC4Q13426 336 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 AHI1Q8N157 1196 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 METTL6Q8TCB7 284 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 UBE2E3Q969T4 207 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 HGH1Q9BTY7 390 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 CAPN15O75808 1086 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 HOXB8P17481 243 aaPredicted RBP13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 TLX1P31314 330 aaPredicted RBP13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 CCR4P51679 360 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 FRG1Q14331 258 aaKnown RBP13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF268Q14587 947 aaPredicted RBP13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 CBWD6Q4V339 395 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 TCHHL1Q5QJ38 904 aaPredicted RBP13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 GPSM1Q86YR5 675 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 SYT12Q8IV01 421 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 RNF145Q96MT1 663 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 ELOVL4Q9GZR5 314 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 SNTG2Q9NY99 539 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 CORO2BQ9UQ03 480 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 SAMD4BQ5PRF9 694 aaKnown RBP13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 PPM1LQ5SGD2 360 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF720Q7Z2F6 126 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 ZDHHC13Q8IUH4 622 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 ADHFE1Q8IWW8 467 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 ABRAQ8N0Z2 381 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 GMCL1Q96IK5 515 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 FAM126AQ9BYI3 521 aaPredicted RBP13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 REEP1Q9H902 201 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 ATAD3AQ9NVI7 634 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 TAF6LQ9Y6J9 622 aa13.02□□□□□ -0.32
CCDC88C-204ENST00000389857 TSPAN3O60637 253 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 DGKAP23743 735 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 S100GP29377 79 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 S100A3P33764 101 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 ZNF621Q6ZSS3 439 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 TNPO3Q9Y5L0 923 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 CLOCKO15516 846 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 ATP6V1G2O95670 118 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 RCVRNP35243 200 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 MSLNQ13421 630 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 INO80DQ53TQ3 878 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 METTL7BQ6UX53 244 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 TFAP2DQ7Z6R9 452 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 TXNRD3Q86VQ6 643 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 ENGASEQ8NFI3 743 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 OXNAD1Q96HP4 312 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 MPP4Q96JB8 637 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 TSPAN16Q9UKR8 245 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 PPIEQ9UNP9 301 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 INO80Q9ULG1 1556 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 ANKDD1BA6NHY2 528 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 GHRP10912 638 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 MGAT1P26572 445 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 PTENP60484 403 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 GRIK4Q16099 956 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 PAPD7Q5XG87 772 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 UBAP1Q9NZ09 502 aa13.02□□□□□ -0.33
CCDC88C-204ENST00000389857 BTN3A1O00481 513 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 NTSR2O95665 410 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 TGFBR2P37173 567 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 ARMC12Q5T9G4 340 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 COLGALT2Q8IYK4 626 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 COX7A2P14406 83 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 INTS11Q5TA45 600 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 DEFB128Q7Z7B8 93 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 NARS2Q96I59 477 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 VCPIP1Q96JH7 1222 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 ATXN3LQ9H3M9 355 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 POLR1BQ9H9Y6 1135 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 ANAPC2Q9UJX6 822 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 SPATA31A6Q5VVP1 1343 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 TRDMT1O14717 391 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 RIPK2O43353 540 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 CXCL8P10145 99 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 ARP10275 920 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 EIF2B2P49770 351 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 EDEM1Q92611 657 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 CELF6Q96J87 481 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 FDXACB1Q9BRP7 624 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 SPATA5L1Q9BVQ7 753 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC39A8Q9C0K1 460 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 NAALADL1Q9UQQ1 740 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 CNTNAP4Q9C0A0 1308 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 SPTLC1O15269 473 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 CTSEP14091 401 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC34A1Q06495 639 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 EPS8Q12929 822 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 ATP1A4Q13733 1029 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 BMPR2Q13873 1038 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 PSME2Q9UL46 239 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 N6AMT1Q9Y5N5 214 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 GNRH1P01148 92 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 CXCR2P25025 360 aa13.01□□□□□ -0.33
CCDC88C-204ENST00000389857 NAA20P61599 178 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms