RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TRIB2Q92519 343 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 CERS2Q96G23 380 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 BTBD10Q9BSF8 475 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 CAB39LQ9H9S4 337 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 GABRQQ9UN88 632 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 SHROOM3Q8TF72 1996 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 GOLGA8TH3BQL2 631 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 DUSP11O75319 330 aaKnown RBP13.69□□□□□ -0.22
CCDC3-202ENST00000378839 AKR1A1P14550 325 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 EZRP15311 586 aaKnown RBP13.69□□□□□ -0.22
CCDC3-202ENST00000378839 NFKB1P19838 968 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 GALNT2Q10471 571 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 EIF4EBP2Q13542 120 aaPredicted RBP13.69□□□□□ -0.22
CCDC3-202ENST00000378839 C10orf107Q8IVU9 208 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 WDR60Q8WVS4 1066 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 MOCOSQ96EN8 888 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 OXCT2Q9BYC2 517 aaPredicted RBP13.69□□□□□ -0.22
CCDC3-202ENST00000378839 CASS4Q9NQ75 786 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 CHRAC1Q9NRG0 131 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 SLC38A7Q9NVC3 462 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 KCNK4Q9NYG8 393 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 BIRC5O15392 142 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 PROCP04070 461 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 GARSP41250 739 aaKnown RBP13.69□□□□□ -0.22
CCDC3-202ENST00000378839 IRF9Q00978 393 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 ZBTB16Q05516 673 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 CRHR2Q13324 411 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 KRT72Q14CN4 511 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 PM20D1Q6GTS8 502 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 C4orf50Q6ZRC1 276 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 MRPL10Q7Z7H8 261 aaKnown RBP13.69□□□□□ -0.22
CCDC3-202ENST00000378839 APBB2Q92870 758 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 SORT1Q99523 831 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 DNAI2Q9GZS0 605 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 WDCPQ9H6R7 721 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 NDFIP2Q9NV92 336 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 PADI3Q9ULW8 664 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 CCDC78A2IDD5 438 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 ENO4A6NNW6 628 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 TNPO2O14787 897 aaKnown RBP13.69□□□□□ -0.22
CCDC3-202ENST00000378839 STK10O94804 968 aaKnown RBP13.69□□□□□ -0.22
CCDC3-202ENST00000378839 TPBGLP0DKB5 382 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 CYBAP13498 195 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 HCAR3P49019 387 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 UBAP2LQ14157 1087 aaKnown RBP13.69□□□□□ -0.22
CCDC3-202ENST00000378839 TMEM135Q86UB9 458 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 SMARCD1Q96GM5 515 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 MTG1Q9BT17 334 aaPredicted RBP13.69□□□□□ -0.22
CCDC3-202ENST00000378839 MCMBPQ9BTE3 642 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 CCDC106Q9BWC9 280 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 RNPEPL1Q9HAU8 725 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 VANGL2Q9ULK5 521 aa13.69□□□□□ -0.22
CCDC3-202ENST00000378839 H0Y3Z8 333 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 B3GAT3O94766 335 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 STX3Q13277 289 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 TNS4Q8IZW8 715 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 DCLK2Q8N568 766 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 ZNF669Q96BR6 464 aaPredicted RBP13.68□□□□□ -0.22
CCDC3-202ENST00000378839 MIEF2Q96C03 454 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 GBA3Q9H227 469 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 PRDM16Q9HAZ2 1276 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 PTCH2Q9Y6C5 1203 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 CNTFP26441 200 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 MAGEA12P43365 314 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 ITGA7Q13683 1181 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 ANKRD20A4Q4UJ75 823 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 ATG16L1Q676U5 607 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 KYAT3Q6YP21 454 aaKnown RBP13.68□□□□□ -0.22
CCDC3-202ENST00000378839 SPATA22Q8NHS9 363 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 DQX1Q8TE96 717 aaKnown RBP13.68□□□□□ -0.22
CCDC3-202ENST00000378839 USP33Q8TEY7 942 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 HDAC11Q96DB2 347 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 NMRK2Q9NPI5 230 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 ACSS2Q9NR19 701 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 SNX15Q9NRS6 342 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 PNPOQ9NVS9 261 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 NOP53Q9NZM5 478 aaKnown RBP13.68□□□□□ -0.22
CCDC3-202ENST00000378839 ZFATQ9P243 1243 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 NUDT5Q9UKK9 219 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 GIT1Q9Y2X7 761 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 NLRC5Q86WI3 1866 aa13.68□□□□□ -0.22
CCDC3-202ENST00000378839 TTC3P53804 2025 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 MSI1O43347 362 aaKnown RBP13.67□□□□□ -0.22
CCDC3-202ENST00000378839 ATP9BO43861 1147 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 CCDC22O60826 627 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 JCHAINP01591 159 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 POLBP06746 335 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 SRGAP2BP0DMP2 458 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 NMBRP28336 390 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 GCKP35557 465 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 HSP90AA5PQ58FG0 334 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 FAM91A1Q658Y4 838 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 FSTL4Q6MZW2 842 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 NAPRTQ6XQN6 538 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 NUDCD1Q96RS6 583 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 PPARGC1AQ9UBK2 798 aaKnown RBP13.67□□□□□ -0.22
CCDC3-202ENST00000378839 IGLV3-25P01717 112 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 ENO1P06733 434 aaKnown RBP13.67□□□□□ -0.22
CCDC3-202ENST00000378839 CALB2P22676 271 aa13.67□□□□□ -0.22
CCDC3-202ENST00000378839 YY1P25490 414 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms