RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 YBX3P16989 372 aaKnown RBP eCLIP6.66□□□□□ -1.344e-7■■□□□ 13.9
SMC1A-202ENST00000375340 PTPRAP18433 802 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 IRF9Q00978 393 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 PRKAA1Q13131 559 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CYP51A1Q16850 503 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 TRIM16LQ309B1 348 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 LRRC38Q5VT99 294 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 B3GNT6Q6ZMB0 384 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 C18orf25Q96B23 403 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 PHF12Q96QT6 1004 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 LATS2Q9NRM7 1088 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ZSCAN9O15535 394 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 BPGMP07738 259 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 PIK3R1P27986 724 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 AKT1P31749 480 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ADCYAP1R1P41586 468 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CD151P48509 253 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 WASHC5Q12768 1159 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 TRIM25Q14258 630 aaKnown RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ADGRD1Q6QNK2 874 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 AMIGO2Q86SJ2 522 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 PIWIL2Q8TC59 973 aaKnown RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ZNF317Q96PQ6 595 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 DPEP3Q9H4B8 488 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 KIAA1257Q9ULG3 409 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 MYRFQ9Y2G1 1151 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 A0A087X1B8 175 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 TMEM114B3SHH9 223 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ZNF189O75820 626 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 KLRC2P26717 231 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 SKIV2L2P42285 1042 aaKnown RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 RALGDSQ12967 914 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ZNF460Q14592 562 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CYP1B1Q16678 543 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 GJC2Q5T442 439 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 TXNRD3NBQ6F5E7 133 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 LRRC8BQ6P9F7 803 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 VSIG10LQ86VR7 867 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 DDHD1Q8NEL9 900 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 EBNA1BP2Q99848 306 aaKnown RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 VTI1BQ9UEU0 232 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CCL15-CCL14A0A0B4J2E2 113 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CCDC154A6NI56 674 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 MTSS1O43312 755 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 BUD23O43709 281 aaKnown RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 MFSD11O43934 449 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 MAFO75444 373 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 LGALS2P05162 132 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 RPS12P25398 132 aaKnown RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 HOXA10P31260 410 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 SOAT1P35610 550 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ASPAP45381 313 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 TUBP50607 506 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CDH17Q12864 832 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CCL15Q16663 113 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 AASDHQ4L235 1098 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 SLC44A4Q53GD3 710 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CWF19L1Q69YN2 538 aaKnown RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CLEC4DQ8WXI8 215 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ERLEC1Q96DZ1 483 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CERS2Q96G23 380 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 BIRC5O15392 142 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 GLP2RO95838 553 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CYP1A1P04798 512 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ADARP55265 1226 aaKnown RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 JAG1P78504 1218 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 MAPK11Q15759 364 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ZACNQ401N2 412 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 BBS12Q6ZW61 710 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CARNMT1Q8N4J0 409 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 LENG1Q96BZ8 264 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CDT1Q9H211 546 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ARHGEF3Q9NR81 526 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 NCKIPSDQ9NZQ3 722 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CROTQ9UKG9 612 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 DDX60LQ5H9U9 1706 aaKnown RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ME2P23368 584 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 MSS51Q4VC12 460 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 CERCAMQ5T4B2 595 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 RNF219Q5W0B1 726 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 FAM83AQ86UY5 434 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 GLIS1Q8NBF1 620 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 GPR63Q9BZJ6 419 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 RIC8BQ9NVN3 520 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 PRG3Q9Y2Y8 225 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 SNX10Q9Y5X0 201 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 C16orf96A6NNT2 1141 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 M0R3G1 203 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 PLA2G6O60733 806 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 PEX2P28328 305 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 PCSK1P29120 753 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 GRIA3P42263 894 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 NAB1Q13506 487 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 SPRED3Q2MJR0 410 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 WSCD1Q658N2 575 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 PACS1Q6VY07 963 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 BANPQ8N9N5 519 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 ACOX2Q99424 681 aa6.66□□□□□ -1.34
SMC1A-202ENST00000375340 WDR55Q9H6Y2 383 aaPredicted RBP6.66□□□□□ -1.34
SMC1A-202ENST00000375340 PCDH18Q9HCL0 1135 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms