RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 USP13Q92995 863 aaPredicted RBP16.75■□□□□ 0.27
SDC4-201ENST00000372733 GATA5Q9BWX5 397 aaPredicted RBP16.75■□□□□ 0.27
SDC4-201ENST00000372733 GRIP2Q9C0E4 1043 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 VPS33BQ9H267 617 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 A0A096LPK6 155 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 CCDC160A6NGH7 325 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 DENRO43583 198 aaKnown RBP16.75■□□□□ 0.27
SDC4-201ENST00000372733 TOMM70O94826 608 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 C22orf31O95567 290 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 CCDC130P13994 396 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 ADORA2BP29275 332 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 EPHA3P29320 983 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 ARL4AP40617 200 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 NUMBP49757 651 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 ADGRE1Q14246 886 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 RARS2Q5T160 578 aaKnown RBP16.75■□□□□ 0.27
SDC4-201ENST00000372733 GRTP1Q5TC63 336 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 FSTL4Q6MZW2 842 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 LBX2Q6XYB7 198 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 ZNF567Q8N184 647 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 ACVR1CQ8NER5 493 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 RCN3Q96D15 328 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 AGAP3Q96P47 875 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 CDRT15Q96T59 188 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 COPS7BQ9H9Q2 264 aaPredicted RBP16.75■□□□□ 0.27
SDC4-201ENST00000372733 RIMS3Q9UJD0 308 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 HACD1B0YJ81 288 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 CFLARO15519 480 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 ASLP04424 464 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 SETSIPP0DME0 302 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 RGS2P41220 211 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 RPL5P46777 297 aaKnown RBP16.74■□□□□ 0.27
SDC4-201ENST00000372733 PGGT1BP53609 377 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 LIMK2P53671 638 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 INHBCP55103 352 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 PAOXQ6QHF9 649 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 BNC2Q6ZN30 1099 aaPredicted RBP16.74■□□□□ 0.27
SDC4-201ENST00000372733 SLC26A9Q7LBE3 791 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 FBXO16Q8IX29 292 aaPredicted RBP16.74■□□□□ 0.27
SDC4-201ENST00000372733 LILRA2Q8N149 483 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 DGCR14Q96DF8 476 aaKnown RBP16.74■□□□□ 0.27
SDC4-201ENST00000372733 MARK4Q96L34 752 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 LRGUKQ96M69 825 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 NAT9Q9BTE0 207 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 IRAK4Q9NWZ3 460 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 PTTG2Q9NZH5 202 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 LZTS1Q9Y250 596 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 SCN1AP35498 2009 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 A0A0G2JMZ2 1700 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 LRRC37A2A6NM11 1700 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 SYNJ2BP-COX16A0A087WUM0 186 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 KCNK1O00180 336 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 VTNP04004 478 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 MYBPC1Q00872 1141 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 TBC1D25Q3MII6 688 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 SPANXN3Q5MJ09 141 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 TMEM198Q66K66 360 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 ISL2Q96A47 359 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 NDUFA13Q9P0J0 144 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 COX16Q9P0S2 106 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 PRPF19Q9UMS4 504 aaKnown RBP16.74■□□□□ 0.27
SDC4-201ENST00000372733 GJA3Q9Y6H8 435 aa16.74■□□□□ 0.27
SDC4-201ENST00000372733 TRIM13O60858 407 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 PITX1P78337 314 aaPredicted RBP16.73■□□□□ 0.27
SDC4-201ENST00000372733 ITGA7Q13683 1181 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 ZNF423Q2M1K9 1284 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 LSM12Q3MHD2 195 aaKnown RBP16.73■□□□□ 0.27
SDC4-201ENST00000372733 C6orf52Q5T4I8 152 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 KLHDC10Q6PID8 442 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 RIOX2Q8IUF8 465 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 KYQ8NBH2 561 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 AFG1LQ8WV93 481 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 NDRG1Q92597 394 aaKnown RBP16.73■□□□□ 0.27
SDC4-201ENST00000372733 FERMT1Q9BQL6 677 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 MAF1Q9H063 256 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 PRDM12Q9H4Q4 367 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 Q9H521 79 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 RNF19AQ9NV58 838 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 GTF2IRD1Q9UHL9 959 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 ADAM28Q9UKQ2 775 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 PHF24Q9UPV7 400 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 AK5Q9Y6K8 562 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 TMEM114B3SHH9 223 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 STX16-NPEPL1H3BU86 382 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 TK2O00142 265 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 SOCS7O14512 581 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 SRGAP2BP0DMP2 458 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 THRAP10827 490 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 ENO3P13929 434 aaPredicted RBP16.73■□□□□ 0.27
SDC4-201ENST00000372733 SPRP35270 261 aaPredicted RBP16.73■□□□□ 0.27
SDC4-201ENST00000372733 MS4A2Q01362 244 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 CEACAM7Q14002 265 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 HSP90AA5PQ58FG0 334 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 METTL21CQ5VZV1 264 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 IYDQ6PHW0 289 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 C16orf89Q6UX73 402 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 CLEC14AQ86T13 490 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 TTC39CQ8N584 583 aa16.73■□□□□ 0.27
SDC4-201ENST00000372733 BHLHE22Q8NFJ8 381 aaPredicted RBP16.73■□□□□ 0.27
SDC4-201ENST00000372733 OR6B3Q8NGW1 331 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms