RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 PRAMEF14Q5SWL7 426 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 C9orf64Q5T6V5 341 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 SYPL2Q5VXT5 272 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 RNF219Q5W0B1 726 aaPredicted RBP10.7□□□□□ -0.7
CLRN3-201ENST00000368671 TTI2Q6NXR4 508 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 NCEH1Q6PIU2 408 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 GATAD2AQ86YP4 633 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 APCDD1Q8J025 514 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 GALNT15Q8N3T1 639 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 EHBP1Q8NDI1 1231 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 HNRNPLLQ8WVV9 542 aaKnown RBP10.7□□□□□ -0.7
CLRN3-201ENST00000368671 NELFBQ8WX92 580 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 SLC39A13Q96H72 371 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 RPL10LQ96L21 214 aaKnown RBP10.7□□□□□ -0.7
CLRN3-201ENST00000368671 KREMEN1Q96MU8 473 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 TIGD1Q96MW7 591 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 EBF2Q9HAK2 575 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 AASDHPPTQ9NRN7 309 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 TJP2Q9UDY2 1190 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 FTSJ1Q9UET6 329 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 RAXQ9Y2V3 346 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 GPSM3Q9Y4H4 160 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 NUMA1Q14980 2115 aa10.7□□□□□ -0.7
CLRN3-201ENST00000368671 ITIH6Q6UXX5 1313 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 A0A1B0GTQ1 180 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 EDDM13A0A1B0GTR0 161 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 BICDL2A1A5D9 508 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 TARSL2A2RTX5 802 aaKnown RBP10.69□□□□□ -0.7
CLRN3-201ENST00000368671 LRRC72A6NJI9 287 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 E5RJQ4 531 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 BIN1O00499 593 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 VILLO15195 856 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 SART1O43290 800 aaKnown RBP10.69□□□□□ -0.7
CLRN3-201ENST00000368671 THAP12O43422 761 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 PCDHGA12O60330 932 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 DKK1O94907 266 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 LETM1O95202 739 aaPredicted RBP10.69□□□□□ -0.7
CLRN3-201ENST00000368671 AFPP02771 609 aaKnown RBP10.69□□□□□ -0.7
CLRN3-201ENST00000368671 WNT1P04628 370 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 TACR2P21452 398 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 ACADSBP45954 432 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 STK19P49842 368 aaPredicted RBP10.69□□□□□ -0.7
CLRN3-201ENST00000368671 RACK1P63244 317 aaKnown RBP10.69□□□□□ -0.7
CLRN3-201ENST00000368671 ECT2LQ008S8 904 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 NNTQ13423 1086 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 ZC3H12AQ5D1E8 599 aaKnown RBP10.69□□□□□ -0.7
CLRN3-201ENST00000368671 DHRS13Q6UX07 377 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 PDZD3Q86UT5 571 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 CIR1Q86X95 450 aaPredicted RBP10.69□□□□□ -0.7
CLRN3-201ENST00000368671 STK40Q8N2I9 435 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 SKA1Q96BD8 255 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 INTS2Q9H0H0 1204 aaKnown RBP10.69□□□□□ -0.7
CLRN3-201ENST00000368671 SLCO3A1Q9UIG8 710 aa10.69□□□□□ -0.7
CLRN3-201ENST00000368671 SYNJ2BP-COX16A0A087WUM0 186 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 TRABD2BA6NFA1 517 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 F5H5T6 163 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 CBX4O00257 560 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 WNT9AO14904 365 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 PAPSS1O43252 624 aaPredicted RBP10.68□□□□□ -0.7
CLRN3-201ENST00000368671 MED7O43513 233 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 DFNA5O60443 496 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 TRUB2O95900 331 aaKnown RBP10.68□□□□□ -0.7
CLRN3-201ENST00000368671 IL1BP01584 269 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 ITGAVP06756 1048 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 ABCB4P21439 1286 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 NNMTP40261 264 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 RPL34P49207 117 aaKnown RBP10.68□□□□□ -0.7
CLRN3-201ENST00000368671 PITX1P78337 314 aaPredicted RBP10.68□□□□□ -0.7
CLRN3-201ENST00000368671 CYP4F3Q08477 520 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 SND1Q7KZF4 910 aaKnown RBP eCLIP10.68□□□□□ -0.7
CLRN3-201ENST00000368671 TRIM59Q8IWR1 403 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 AADATQ8N5Z0 425 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 ATP6V0D2Q8N8Y2 350 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 KDM1BQ8NB78 822 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 OR2T34Q8NGX1 318 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 OR14C36Q8NHC7 312 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 PTPRN2Q92932 1015 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 FAM129BQ96TA1 746 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 ELF4Q99607 663 aaPredicted RBP10.68□□□□□ -0.7
CLRN3-201ENST00000368671 TRIM62Q9BVG3 475 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 POPDC2Q9HBU9 364 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 UBE2TQ9NPD8 197 aaPredicted RBP10.68□□□□□ -0.7
CLRN3-201ENST00000368671 ACP6Q9NPH0 428 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 COX16Q9P0S2 106 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 ADAMTS1Q9UHI8 967 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 CYTH4Q9UIA0 394 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 FZD4Q9ULV1 537 aa10.68□□□□□ -0.7
CLRN3-201ENST00000368671 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.68□□□□□ -0.7
CLRN3-201ENST00000368671 COL5A1P20908 1838 aaPredicted RBP10.68□□□□□ -0.7
CLRN3-201ENST00000368671 CACNA1EQ15878 2313 aa10.67□□□□□ -0.7
CLRN3-201ENST00000368671 PLK4O00444 970 aa10.67□□□□□ -0.7
CLRN3-201ENST00000368671 ENC1O14682 589 aa10.67□□□□□ -0.7
CLRN3-201ENST00000368671 GNA14O95837 355 aa10.67□□□□□ -0.7
CLRN3-201ENST00000368671 VAV1P15498 845 aa10.67□□□□□ -0.7
CLRN3-201ENST00000368671 PDGFRAP16234 1089 aa10.67□□□□□ -0.7
CLRN3-201ENST00000368671 GOT1P17174 413 aa10.67□□□□□ -0.7
CLRN3-201ENST00000368671 C5AR1P21730 350 aa10.67□□□□□ -0.7
CLRN3-201ENST00000368671 BMP6P22004 513 aa10.67□□□□□ -0.7
CLRN3-201ENST00000368671 MZF1P28698 734 aaPredicted RBP10.67□□□□□ -0.7
CLRN3-201ENST00000368671 CD38P28907 300 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms