RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 NMRK1Q9NWW6 199 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 TUBGCP4Q9UGJ1 667 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 GNG14A0A1W2PPG7 69 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 ZSCAN5CA6NGD5 496 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-204ENST00000367248 TCN1P20061 433 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-204ENST00000367248 MGAT1P26572 445 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 SERPINA4P29622 427 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 RPL21P46778 160 aaKnown RBP11.82□□□□□ -0.52
SYNE1-204ENST00000367248 PFKPQ01813 784 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 RAET1GQ6H3X3 334 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 PSRC1Q6PGN9 363 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-204ENST00000367248 KDM7AQ6ZMT4 941 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 APBB2Q92870 758 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 TRBV23OR9-2A0A075B6M9 112 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 CPA3P15088 417 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 HLA-DPA1P20036 260 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 CCND3P30281 292 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-204ENST00000367248 IRF2BP1Q8IU81 584 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 LRRC34Q8IZ02 419 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 B4GALNT2Q8NHY0 566 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 DUSP16Q9BY84 665 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 FAF1Q9UNN5 650 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-204ENST00000367248 TSPAN1O60635 241 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 HOXB8P17481 243 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-204ENST00000367248 GRK2P25098 689 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 NPY5RQ15761 445 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 ATP13A4Q4VNC1 1196 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 PDPK2PQ6A1A2 396 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 BBS12Q6ZW61 710 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 LRRC49Q8IUZ0 686 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 NETO2Q8NC67 525 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 SEC16BQ96JE7 1060 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 PDZD7Q9H5P4 517 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 EXO5Q9H790 373 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 NCKIPSDQ9NZQ3 722 aa11.82□□□□□ -0.52
SYNE1-204ENST00000367248 DAB1O75553 588 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 SLC16A1P53985 500 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 PARP6Q2NL67 630 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 SLC45A4Q5BKX6 768 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 GLT6D1Q7Z4J2 308 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 GID8Q9NWU2 228 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 EIF3LQ9Y262 564 aaKnown RBP11.81□□□□□ -0.52
SYNE1-204ENST00000367248 FAM32AQ9Y421 112 aaKnown RBP11.81□□□□□ -0.52
SYNE1-204ENST00000367248 WDR27A2RRH5 827 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 DAB2P98082 770 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 DPYSL3Q14195 570 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 CES3Q6UWW8 571 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 KCNMB4Q86W47 210 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 CFAP52Q8N1V2 620 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 GMLQ99445 158 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 C1QTNF7Q9BXJ2 289 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 CFAP97Q9P2B7 532 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 CTNNAL1Q9UBT7 734 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 CNTNAP1P78357 1384 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 XPO1O14980 1071 aaKnown RBP11.81□□□□□ -0.52
SYNE1-204ENST00000367248 USP12O75317 370 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 CYP2A6P11509 494 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-204ENST00000367248 GCKP35557 465 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 OTOAQ7RTW8 1153 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 C12orf29Q8N999 325 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 LRRN4Q8WUT4 740 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 AUTS2Q8WXX7 1259 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 NAF1Q96HR8 494 aaKnown RBP11.81□□□□□ -0.52
SYNE1-204ENST00000367248 RBBP8Q99708 897 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 TBL1YQ9BQ87 522 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 MRPL45Q9BRJ2 306 aaKnown RBP11.81□□□□□ -0.52
SYNE1-204ENST00000367248 TMBIM4Q9HC24 238 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 BPIFA1Q9NP55 256 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 CHCHD3Q9NX63 227 aaKnown RBP11.81□□□□□ -0.52
SYNE1-204ENST00000367248 ZW10O43264 779 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 TLR5O60602 858 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 KATNA1O75449 491 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 MATKP42679 507 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 CACHD1Q5VU97 1274 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 C16orf89Q6UX73 402 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 POLNQ7Z5Q5 900 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 ST13P4Q8IZP2 240 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-204ENST00000367248 SEMA4DQ92854 862 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 CAVIN3Q969G5 261 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 C10orf88Q9H8K7 445 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 NID2Q14112 1375 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 PHLPP1O60346 1717 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 NCANO14594 1321 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 A0A0A0MRY4 1105 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 PPP1R26Q5T8A7 1209 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-204ENST00000367248 TRPM8Q7Z2W7 1104 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 MON1AQ86VX9 555 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 CREG2Q8IUH2 290 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 LRRC39Q96DD0 335 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 PPP1R16AQ96I34 528 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 SPATA13Q96N96 652 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 RNF157Q96PX1 679 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 SNX5Q9Y5X3 404 aa11.81□□□□□ -0.52
SYNE1-204ENST00000367248 EIF4E1BA6NMX2 242 aaKnown RBP11.8□□□□□ -0.52
SYNE1-204ENST00000367248 EVPLLA8MZ36 301 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 H2AFXP16104 143 aaPredicted RBP11.8□□□□□ -0.52
SYNE1-204ENST00000367248 STX5Q13190 355 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 KBTBD12Q3ZCT8 623 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 C17orf80Q9BSJ5 609 aa11.8□□□□□ -0.52
SYNE1-204ENST00000367248 C22orf31O95567 290 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms