RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CFHR5Q9BXR6 569 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 CALN1Q9BXU9 219 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 SLC2A11Q9BYW1 496 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 GRIP2Q9C0E4 1043 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 PDZD7Q9H5P4 517 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 FAM124BQ9H5Z6 455 aaPredicted RBP16.24■□□□□ 0.19
HMGA1-202ENST00000347617 CYP4F11Q9HBI6 524 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 PLGRKTQ9HBL7 147 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 UBAP1Q9NZ09 502 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 RIMS3Q9UJD0 308 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 BLOC1S6Q9UL45 172 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 USP18Q9UMW8 372 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 G3BP2Q9UN86 482 aaKnown RBP16.24■□□□□ 0.19
HMGA1-202ENST00000347617 MGAMO43451 1857 aa16.24■□□□□ 0.19
HMGA1-202ENST00000347617 E9PBE3 544 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ZNF195O14628 629 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ZBED1O96006 694 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 GSRP00390 522 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 TNNC2P02585 160 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 MLNP12872 115 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ZNF23P17027 643 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ARF4P18085 180 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 YY1P25490 414 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 AXLP30530 894 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ERFP50548 548 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 NUP107P57740 925 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 GJA9P57773 515 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 TUBA4AP68366 448 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 MYBPC1Q00872 1141 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 DPYSQ14117 519 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 LPIN1Q14693 890 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 PTPN20Q4JDL3 420 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 KCNT1Q5JUK3 1230 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 N4BP2L1Q5TBK1 243 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 CYP4A22Q5TCH4 519 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 BBS5Q8N3I7 341 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ZBTB8BQ8NAP8 495 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 JOSD2Q8TAC2 188 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 FNDC8Q8TC99 324 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ANKRD36BP1Q96IX9 119 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 SIGLEC10Q96LC7 697 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 MRPL1Q9BYD6 325 aaKnown RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 MRPL40Q9NQ50 206 aaKnown RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 RHBDL2Q9NX52 303 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 MOCS1Q9NZB8 636 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 RSL24D1Q9UHA3 163 aaKnown RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ITGB1BP2Q9UKP3 347 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 HMX2A2RU54 273 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 KCNN4O15554 427 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ITM2AO43736 263 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 TSPAN1O60635 241 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 GPR32O75388 356 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ALDH1A2O94788 518 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 NCF2P19878 526 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 CTGFP29279 349 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 PCLAFQ15004 111 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 FSCN1Q16658 493 aaKnown RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 DCAF4L1Q3SXM0 396 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 TCHHL1Q5QJ38 904 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 MROH9Q5TGP6 573 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 EPGNQ6UW88 154 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 BNC2Q6ZN30 1099 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ZCCHC23Q6ZST2 131 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 FRMD7Q6ZUT3 714 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 RNF157Q96PX1 679 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ADPGKQ9BRR6 497 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 TRIM56Q9BRZ2 755 aaKnown RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 UPF3AQ9H1J1 476 aaKnown RBP16.23■□□□□ 0.19
HMGA1-202ENST00000347617 PLAC1Q9HBJ0 212 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 FAIMQ9NVQ4 179 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 MID2Q9UJV3 735 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 EMCNQ9ULC0 261 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 PCDHB12Q9Y5F1 795 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 CEPT1Q9Y6K0 416 aa16.23■□□□□ 0.19
HMGA1-202ENST00000347617 ZNF701M0R085 212 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-202ENST00000347617 CBFA2T3O75081 653 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 HNRNPCP07910 306 aaKnown RBP eCLIP16.22■□□□□ 0.19
HMGA1-202ENST00000347617 STAG3L1P0CL83 205 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 RALBP11234 206 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 CYBAP13498 195 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 CDH2P19022 906 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-202ENST00000347617 GARSP41250 739 aaKnown RBP16.22■□□□□ 0.19
HMGA1-202ENST00000347617 RPL10AP62906 217 aaKnown RBP16.22■□□□□ 0.19
HMGA1-202ENST00000347617 RFTN1Q14699 578 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-202ENST00000347617 SEZ6Q53EL9 994 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 XYLT1Q86Y38 959 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 KYQ8NBH2 561 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 RP9Q8TA86 221 aaKnown RBP16.22■□□□□ 0.19
HMGA1-202ENST00000347617 HSPH1Q92598 858 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 MCRS1Q96EZ8 462 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 SORT1Q99523 831 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 CNPY3Q9BT09 278 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 NAT9Q9BTE0 207 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 VRTNQ9H8Y1 702 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 PLEKHA5Q9HAU0 1116 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 ADAM28Q9UKQ2 775 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 WDR37Q9Y2I8 494 aa16.22■□□□□ 0.19
HMGA1-202ENST00000347617 GOLGA8QA0A0J9YX86 632 aa16.21■□□□□ 0.19
HMGA1-202ENST00000347617 RGSL1A5PLK6 1076 aa16.21■□□□□ 0.19
HMGA1-202ENST00000347617 GOLGA8OA6NCC3 632 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms