RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ARRDC1-AS1Q9H2J1 176 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 MTG2Q9H4K7 406 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 PRDM16Q9HAZ2 1276 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 PRSS16Q9NQE7 514 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 OR51B4Q9Y5P0 310 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.28■□□□□ 0.2
CLN3-201ENST00000333496 IGHV1OR15-9A0A0B4J2B8 117 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 SRGAP2O75044 1071 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 RTN2O75298 545 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 MOCS3O95396 460 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 C7P10643 843 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 ZNF177Q13360 481 aaPredicted RBP16.28■□□□□ 0.2
CLN3-201ENST00000333496 ELF2Q15723 593 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 TDRD12Q587J7 1177 aaKnown RBP16.28■□□□□ 0.2
CLN3-201ENST00000333496 ACBD5Q5T8D3 534 aaPredicted RBP16.28■□□□□ 0.2
CLN3-201ENST00000333496 SPACA7Q96KW9 195 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 RPL10LQ96L21 214 aaKnown RBP16.28■□□□□ 0.2
CLN3-201ENST00000333496 FEM1AQ9BSK4 669 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 ZNF212Q9UDV6 495 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 ADAMTS1Q9UHI8 967 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 SLCO3A1Q9UIG8 710 aa16.28■□□□□ 0.2
CLN3-201ENST00000333496 FAM72CH0Y354 149 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 ZBTB24O43167 697 aaPredicted RBP16.27■□□□□ 0.2
CLN3-201ENST00000333496 ZNF217O75362 1048 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 RHOBTB1O94844 696 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 SERPING1P05155 500 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 TPM3P06753 285 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 SRPRAP08240 638 aaKnown RBP16.27■□□□□ 0.2
CLN3-201ENST00000333496 STK19P49842 368 aaPredicted RBP16.27■□□□□ 0.2
CLN3-201ENST00000333496 ECT2LQ008S8 904 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 BYSLQ13895 437 aaKnown RBP16.27■□□□□ 0.2
CLN3-201ENST00000333496 CCDC6Q16204 474 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 FAM72AQ5TYM5 149 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 MANEALQ5VSG8 457 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 FAM72DQ6L9T8 149 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 DCUN1D2Q6PH85 259 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 KIAA1324Q6UXG2 1013 aaKnown RBP16.27■□□□□ 0.2
CLN3-201ENST00000333496 LRRC31Q6UY01 552 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 METTL3Q86U44 580 aaKnown RBP16.27■□□□□ 0.2
CLN3-201ENST00000333496 C11orf74Q86VG3 221 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 FAM72BQ86X60 149 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 OR2T3Q8NH03 318 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 PARVAQ9NVD7 372 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 ARHGAP20Q9P2F6 1191 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 OR12D3Q9UGF7 316 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 CYP8B1Q9UNU6 501 aa16.27■□□□□ 0.2
CLN3-201ENST00000333496 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLN3-201ENST00000333496 BZW2Q9Y6E2 419 aaKnown RBP16.27■□□□□ 0.2
CLN3-201ENST00000333496 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 TTC34A8MYJ7 566 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 AP5Z1O43299 807 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 CBFA2T2O43439 604 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 LRP3O75074 770 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 NRG1Q02297 640 aaPredicted RBP16.27■□□□□ 0.19
CLN3-201ENST00000333496 ARID5BQ14865 1188 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 ARL13BQ3SXY8 428 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 RNF219Q5W0B1 726 aaPredicted RBP16.27■□□□□ 0.19
CLN3-201ENST00000333496 SPECC1LQ69YQ0 1117 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 TFAP2DQ7Z6R9 452 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 CACUL1Q86Y37 369 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 TMEFF1Q8IYR6 380 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 KDM1BQ8NB78 822 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 NTAN1Q96AB6 310 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 SIPA1Q96FS4 1042 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 CNPY3Q9BT09 278 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 TRIM7Q9C029 511 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 OSBPL2Q9H1P3 480 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 ITM2CQ9NQX7 267 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 SEMA4GQ9NTN9 838 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 USP36Q9P275 1121 aaKnown RBP16.27■□□□□ 0.19
CLN3-201ENST00000333496 SUN2Q9UH99 717 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 NEU3Q9UQ49 428 aa16.27■□□□□ 0.19
CLN3-201ENST00000333496 A0A087X0T9 212 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 FAM228BP0C875 321 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 HNRNPH3P31942 346 aaKnown RBP16.26■□□□□ 0.19
CLN3-201ENST00000333496 OXCT1P55809 520 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 ST8SIA6P61647 398 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 ZNF252P-AS1Q0IIN9 211 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 HNRNPA1L2Q32P51 320 aaKnown RBP16.26■□□□□ 0.19
CLN3-201ENST00000333496 PLA2G2CQ5R387 149 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 VSTM4Q8IW00 320 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 PSMB7Q99436 277 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 ZYG11BQ9C0D3 744 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 PPARGC1AQ9UBK2 798 aaKnown RBP16.26■□□□□ 0.19
CLN3-201ENST00000333496 CNOT8Q9UFF9 292 aaKnown RBP16.26■□□□□ 0.19
CLN3-201ENST00000333496 PCDHGA5Q9Y5G8 931 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 ADAMTS9Q9P2N4 1935 aa16.26■□□□□ 0.19
CLN3-201ENST00000333496 A0A0D9SEW6 157 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 BCLAF3A2AJT9 711 aaKnown RBP16.25■□□□□ 0.19
CLN3-201ENST00000333496 ANKRD62A6NC57 917 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 TMEM191CA6NGB0 347 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 MAP3K13O43283 966 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 SIN3BO75182 1162 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 MSNP26038 577 aaKnown RBP16.25■□□□□ 0.19
CLN3-201ENST00000333496 PTGER3P43115 390 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 TPMTP51580 245 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 CREB5Q02930 508 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 SULT2A1Q06520 285 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 SCAPQ12770 1279 aa16.25■□□□□ 0.19
CLN3-201ENST00000333496 CSRP2Q16527 193 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms