RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 PRDX6P30041 224 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 UGT1A3P35503 534 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 UGT1A5P35504 534 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 BCAR1P56945 870 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 NUP107P57740 925 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 TAP1Q03518 808 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 ART3Q13508 389 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 STILQ15468 1287 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 ZFP1Q6P2D0 407 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 C16orf89Q6UX73 402 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 CHST15Q7LFX5 561 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 ZNF786Q8N393 782 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 RNF157Q96PX1 679 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 HEPHQ9BQS7 1158 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 DHX35Q9H5Z1 703 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 ANKEF1Q9NU02 776 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 PADI4Q9UM07 663 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 CORINQ9Y5Q5 1042 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 CEP350Q5VT06 3117 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 SPTLC1O15269 473 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 BCAS2O75934 225 aaPredicted RBP13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 ATG7O95352 703 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 ASS1P00966 412 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 GRK2P25098 689 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 SERPINB9P50453 376 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 ITGA7Q13683 1181 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 ADRM1Q16186 407 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 TIFABQ6ZNK6 161 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 UBA3Q8TBC4 463 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 GPATCH1Q9BRR8 931 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 TBC1D23Q9NUY8 699 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 PRPF19Q9UMS4 504 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 BCAP31P51572 246 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 C21orf59P57076 290 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 TXNL4AP83876 142 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 PDCD4Q53EL6 469 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 FAM102AQ5T9C2 384 aaPredicted RBP13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 WDR78Q5VTH9 848 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 PCDH19Q8TAB3 1148 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 CGRRF1Q99675 332 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 APBA2Q99767 749 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 MTMR10Q9NXD2 777 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 IGSF9Q9P2J2 1179 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 HMGXB4Q9UGU5 601 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 DCDC2Q9UHG0 476 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 AP4S1Q9Y587 144 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 PCDHB12Q9Y5F1 795 aa13.74□□□□□ -0.21
CCDC88C-201ENST00000331194 GIPC1O14908 333 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 HSD17B4P51659 736 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 OSTNP61366 133 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 IGBP1P78318 339 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 GBE1Q04446 702 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 CYP2A13Q16696 494 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 C16orf87Q6PH81 154 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 TMEM26Q6ZUK4 368 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 LYSMD3Q7Z3D4 306 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 SLC7A5P1Q8MH63 180 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 ACVR1CQ8NER5 493 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 CHURC1Q8WUH1 139 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 CLEC4DQ8WXI8 215 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 PRMT6Q96LA8 375 aaPredicted RBP13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 ZNF597Q96LX8 424 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 RAVER2Q9HCJ3 691 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 MFHAS1Q9Y4C4 1052 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 SOCS2O14508 198 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 VAPBO95292 243 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 NFKBIAP25963 317 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 MGAT1P26572 445 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 HSPA13P48723 471 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 TREML2Q5T2D2 321 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 TBC1D15Q8TC07 691 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 TANKQ92844 425 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 SLCO4A1Q96BD0 722 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 DCPSQ96C86 337 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 VPS50Q96JG6 964 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 UNKQ9C0B0 810 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 TMX2Q9Y320 296 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 K7ERI5 159 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 TIPRLO75663 272 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 STBD1O95210 358 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 MAGEA3P43357 314 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 TFAMQ00059 246 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 GNA12Q03113 381 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 PMS2P3Q13401 168 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 Q3C1V9 767 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 AARS2Q5JTZ9 985 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 HMBOX1Q6NT76 420 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 SYTL5Q8TDW5 730 aaPredicted RBP13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 PPWD1Q96BP3 646 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 TWNKQ96RR1 684 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 ARPC5LQ9BPX5 153 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 GATA5Q9BWX5 397 aaPredicted RBP13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 CDY2AQ9Y6F7 541 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 CDY1Q9Y6F8 540 aa13.73□□□□□ -0.21
CCDC88C-201ENST00000331194 SLX4Q8IY92 1834 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 TMEM233B4DJY2 109 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 HTRA2O43464 458 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 EIF2B2P49770 351 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 RPS6P62753 249 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms