RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 HERC2P3Q9BVR0 1158 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 KRTAP17-1Q9BYP8 105 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 KRTAP4-5Q9BYR2 181 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 TRIM31Q9BZY9 425 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 MLXIPLQ9NP71 852 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 WASH6PQ9NQA3 447 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 TMEM160Q9NX00 188 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 KLQ9UEF7 1012 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 SLC8A2Q9UPR5 921 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 ERCC6Q03468 1493 aa3.7□□□□□ -1.82
HMGB1-201ENST00000326004 CYP2D7A0A087X1C5 515 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 A0A1B0GVC2 190 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 SLC22A23A1A5C7 686 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 TMEM247A6NEH6 219 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 C2CD4BA6NLJ0 364 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 SYN3O14994 580 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 BCAR3O75815 825 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 POLBP06746 335 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 CPA1P15085 419 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 FBLP22087 321 aaKnown RBP3.69□□□□□ -1.82
HMGB1-201ENST00000326004 ATP5F1P24539 256 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-201ENST00000326004 CCR5P51681 352 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 MVDP53602 400 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 TBL3Q12788 808 aaKnown RBP3.69□□□□□ -1.82
HMGB1-201ENST00000326004 STIM1Q13586 685 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 SEMA3AQ14563 771 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 WDR45BQ5MNZ6 344 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 VWA5B1Q5TIE3 1220 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 NAA35Q5VZE5 725 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 ATG16L1Q676U5 607 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 CCDC70Q6NSX1 233 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 AADACL2Q6P093 401 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 MTFR2Q6P444 385 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 LVRNQ6Q4G3 990 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 LRIG3Q6UXM1 1119 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 DEF8Q6ZN54 512 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 FAM57BQ71RH2 274 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 NEK8Q86SG6 692 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 KLBQ86Z14 1044 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 TMTC1Q8IUR5 882 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 NCSTNQ92542 709 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 CUL5Q93034 780 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 HDHD5Q9BXW7 423 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 MOV10Q9HCE1 1003 aaKnown RBP3.69□□□□□ -1.82
HMGB1-201ENST00000326004 PDGFCQ9NRA1 345 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 ADARB2Q9NS39 739 aaKnown RBP3.69□□□□□ -1.82
HMGB1-201ENST00000326004 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.69□□□□□ -1.82
HMGB1-201ENST00000326004 ARL15Q9NXU5 204 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 GGA3Q9NZ52 723 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 KLHL13Q9P2N7 655 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 ZNF69Q9UC07 566 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 CD207Q9UJ71 328 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 AFG3L2Q9Y4W6 797 aa3.69□□□□□ -1.82
HMGB1-201ENST00000326004 SMIM35A0A1B0GVV1 85 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 DPPA5A6NC42 116 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 F8W810 466 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 KLK10O43240 276 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 DHX16O60231 1041 aaKnown RBP3.68□□□□□ -1.82
HMGB1-201ENST00000326004 NFATC1O95644 943 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 LCKP06239 509 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 PYGLP06737 847 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 CELA2AP08217 269 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 WEE2P0C1S8 567 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 LYL1P12980 280 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 ARSAP15289 507 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 MPGP29372 298 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 AVPR2P30518 371 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 PSMC2P35998 433 aaKnown RBP3.68□□□□□ -1.82
HMGB1-201ENST00000326004 ARHGAP8P85298 464 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 RHAGQ02094 409 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 MAPK7Q13164 816 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 DAZAP2Q15038 168 aaPredicted RBP3.68□□□□□ -1.82
HMGB1-201ENST00000326004 DLGAP5Q15398 846 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 KIAA1755Q5JYT7 1200 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 INTS11Q5TA45 600 aaKnown RBP3.68□□□□□ -1.82
HMGB1-201ENST00000326004 SLC18B1Q6NT16 456 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 RETSATQ6NUM9 610 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 SLC30A9Q6PML9 568 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 CYB5R4Q7L1T6 521 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 YTHDF3Q7Z739 585 aaKnown RBP3.68□□□□□ -1.82
HMGB1-201ENST00000326004 ADGRF4Q8IZF3 695 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 VPS52Q8N1B4 723 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 PAF1Q8N7H5 531 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 ARL14EPQ8N8R7 260 aaPredicted RBP3.68□□□□□ -1.82
HMGB1-201ENST00000326004 NAXEQ8NCW5 288 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 FAM110DQ8TAY7 271 aaPredicted RBP3.68□□□□□ -1.82
HMGB1-201ENST00000326004 CLMNQ96JQ2 1002 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 NAP1L4Q99733 375 aaKnown RBP3.68□□□□□ -1.82
HMGB1-201ENST00000326004 CADM1Q9BY67 442 aaKnown RBP3.68□□□□□ -1.82
HMGB1-201ENST00000326004 GPR63Q9BZJ6 419 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 TAOK3Q9H2K8 898 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 NRIP3Q9NQ35 241 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 PAPOLBQ9NRJ5 636 aaKnown RBP3.68□□□□□ -1.82
HMGB1-201ENST00000326004 TMEM248Q9NWD8 314 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 CRYL1Q9Y2S2 319 aa3.68□□□□□ -1.82
HMGB1-201ENST00000326004 E5RJQ4 531 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 EYA2O00167 538 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 MASP2O00187 686 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 PEX12O00623 359 aa3.67□□□□□ -1.82
HMGB1-201ENST00000326004 TP73O15350 636 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms