RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 NUAK2Q9H093 628 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 MUC3BQ9H195 1237 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 CLK4Q9HAZ1 481 aaKnown RBP11.72□□□□□ -0.53
VPS39-201ENST00000318006 TRMT6Q9UJA5 497 aaKnown RBP11.72□□□□□ -0.53
VPS39-201ENST00000318006 TISP43B9A030 160 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 RPLP2P05387 115 aaKnown RBP11.72□□□□□ -0.53
VPS39-201ENST00000318006 SLURP2P0DP57 97 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 COX4I1P13073 169 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 HARS2P49590 506 aaKnown RBP11.72□□□□□ -0.53
VPS39-201ENST00000318006 HK2P52789 917 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 BST2Q10589 180 aaKnown RBP11.72□□□□□ -0.53
VPS39-201ENST00000318006 PWP1Q13610 501 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 TIMM50Q3ZCQ8 353 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 TMEM139Q8IV31 216 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 AMER2Q8N7J2 671 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 EFHBQ8N7U6 833 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 TRAPPC12Q8WVT3 735 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 ZBTB45Q96K62 511 aaPredicted RBP11.72□□□□□ -0.53
VPS39-201ENST00000318006 OSBPL7Q9BZF2 842 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 GANQ9H2C0 597 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 PIF1Q9H611 641 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 GPAMQ9HCL2 828 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 POLG2Q9UHN1 485 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 CPA4Q9UI42 421 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 UBIAD1Q9Y5Z9 338 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 WNT7AO00755 349 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 FBXO21O94952 628 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 GUCA1CO95843 209 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 SOAT1P35610 550 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 PPP3CAQ08209 521 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 UGT3A1Q6NUS8 523 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 MFSD7Q6UXD7 560 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 FGD2Q7Z6J4 655 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 SPATA20Q8TB22 786 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 FIG4Q92562 907 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 WWOXQ9NZC7 414 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 CCDC167Q9P0B6 97 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 DRG1Q9Y295 367 aaKnown RBP11.72□□□□□ -0.53
VPS39-201ENST00000318006 ZMYM2Q9UBW7 1377 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 MAGEB16A2A368 324 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 GSC2O15499 205 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 ALDH1A1P00352 501 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 SERPINA6P08185 405 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 TPBGLP0DKB5 382 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 MAPK1P28482 360 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 NAB1Q13506 487 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 ZNF268Q14587 947 aaPredicted RBP11.71□□□□□ -0.53
VPS39-201ENST00000318006 GPR107Q5VW38 600 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 ATP6V0D2Q8N8Y2 350 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 NAT14Q8WUY8 206 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 ELMO3Q96BJ8 720 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 RNFT2Q96EX2 444 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 PHACTR1Q9C0D0 580 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 PORCNQ9H237 461 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 ABCB10Q9NRK6 738 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.71□□□□□ -0.53
VPS39-201ENST00000318006 SNTG2Q9NY99 539 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 ANAPC2Q9UJX6 822 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 DISP2A7MBM2 1401 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 CHD2O14647 1828 aaKnown RBP11.71□□□□□ -0.53
VPS39-201ENST00000318006 ADM5C9JUS6 153 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 SNAP91O60641 907 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 RTN3O95197 1032 aaPredicted RBP11.71□□□□□ -0.53
VPS39-201ENST00000318006 LHX1P48742 406 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 NDST1P52848 882 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 ITGA1P56199 1179 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 GTF2BQ00403 316 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 COX10Q12887 443 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 GLIS2Q9BZE0 524 aaPredicted RBP11.71□□□□□ -0.53
VPS39-201ENST00000318006 STN1Q9H668 368 aaKnown RBP11.71□□□□□ -0.53
VPS39-201ENST00000318006 TSPAN16Q9UKR8 245 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 PCDHB7Q9Y5E2 793 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 ASTN1O14525 1302 aa11.71□□□□□ -0.53
VPS39-201ENST00000318006 MATN2O00339 956 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 KATNA1O75449 491 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 HNRNPH3P31942 346 aaKnown RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 RPL14P50914 215 aaKnown RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 BST1Q10588 318 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 FRG1Q14331 258 aaKnown RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 TDRD10Q5VZ19 366 aaKnown RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 ZNF57Q68EA5 555 aaPredicted RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 TATDN1Q6P1N9 297 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 CATSPERGQ6ZRH7 1159 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 MIER2Q8N344 545 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 PCDH20Q8N6Y1 951 aaKnown RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 PRELID2Q8N945 189 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 L3MBTL3Q96JM7 780 aaPredicted RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 CPNE1Q99829 537 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 COLEC11Q9BWP8 271 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 ABHD16BQ9H3Z7 469 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 SERHL2Q9H4I8 314 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 SERHLQ9NQF3 203 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 UBA2Q9UBT2 640 aaPredicted RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 ZNF180Q9UJW8 692 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 DUSP12Q9UNI6 340 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 REXO2Q9Y3B8 237 aaKnown RBP11.71□□□□□ -0.54
VPS39-201ENST00000318006 BCL9LQ86UU0 1499 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 EFCAB10A6NFE3 127 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 ATP6V1G1O75348 118 aa11.71□□□□□ -0.54
VPS39-201ENST00000318006 TRMUO75648 421 aaKnown RBP11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms