RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 FOXQ1Q9C009 403 aa18.39■□□□□ 0.53
SSSCA1-201ENST00000309328 MAGEH1Q9H213 219 aa18.39■□□□□ 0.53
SSSCA1-201ENST00000309328 EPHX3Q9H6B9 360 aa18.39■□□□□ 0.53
SSSCA1-201ENST00000309328 LMAN1LQ9HAT1 526 aa18.39■□□□□ 0.53
SSSCA1-201ENST00000309328 PCDH18Q9HCL0 1135 aa18.39■□□□□ 0.53
SSSCA1-201ENST00000309328 LZTFL1Q9NQ48 299 aa18.39■□□□□ 0.53
SSSCA1-201ENST00000309328 ELOVL2Q9NXB9 296 aa18.39■□□□□ 0.53
SSSCA1-201ENST00000309328 ZNF212Q9UDV6 495 aa18.39■□□□□ 0.53
SSSCA1-201ENST00000309328 PALMO75781 387 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 EGFP01133 1207 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 GOT1P17174 413 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 CD72P21854 359 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 GJC1P36383 396 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 CETN2P41208 172 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 VASPP50552 380 aaPredicted RBP18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 ARSEP51690 589 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 NDST2P52849 883 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 GEMIN4P57678 1058 aaKnown RBP18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 DPYSQ14117 519 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 PLEKHG6Q3KR16 790 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 TMEM31Q5JXX7 168 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 ARTNQ5T4W7 220 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 CWF19L1Q69YN2 538 aaKnown RBP18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 TFAP2DQ7Z6R9 452 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 CIR1Q86X95 450 aaPredicted RBP18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 RCOR2Q8IZ40 523 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 UMODL1-AS1Q8N2C9 162 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 DCAF4L2Q8NA75 395 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 TSC1Q92574 1164 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 TTC17Q96AE7 1141 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 CSPG4P5Q96PW8 444 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 FEM1AQ9BSK4 669 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 CALN1Q9BXU9 219 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 MUC3BQ9H195 1237 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 CHRDQ9H2X0 955 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 CWC15Q9P013 229 aaKnown RBP18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 VPS28Q9UK41 221 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 HPCAL4Q9UM19 191 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 PLA2G4CQ9UP65 541 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 COL4A3Q01955 1670 aa18.38■□□□□ 0.53
SSSCA1-201ENST00000309328 LRRD1A4D1F6 860 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 ZSCAN5CA6NGD5 496 aaPredicted RBP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 CHURC1-FNTBB4DL54 471 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 K7EQS6 105 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 ZRANB2O95218 330 aaKnown RBP eCLIP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 SRPRAP08240 638 aaKnown RBP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 DLDP09622 509 aaKnown RBP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 HNRNPLP14866 589 aaKnown RBP eCLIP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 ZFXP17010 805 aaPredicted RBP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 KDELR1P24390 212 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 CTNNA2P26232 953 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 COPS2P61201 443 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 DPYSL3Q14195 570 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 HS1BP3Q53T59 392 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 PITRM1Q5JRX3 1037 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 RNF219Q5W0B1 726 aaPredicted RBP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 TXNRD3NBQ6F5E7 133 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 SDE2Q6IQ49 451 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 TMCO3Q6UWJ1 677 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 METTL3Q86U44 580 aaKnown RBP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 NT5DC3Q86UY8 548 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 LRRC49Q8IUZ0 686 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 EXD1Q8NHP7 514 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 FAF2Q96CS3 445 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 ZNF830Q96NB3 372 aaPredicted RBP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 MAK16Q9BXY0 300 aaKnown RBP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 CIPCQ9C0C6 399 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 FBRSL1Q9HCM7 1045 aaKnown RBP18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 TRIM10Q9UDY6 481 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 CLEC4EQ9ULY5 219 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 PCDHA3Q9Y5H8 950 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 TECTAO75443 2155 aa18.37■□□□□ 0.53
SSSCA1-201ENST00000309328 KRT1P04264 644 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 ERCC2P18074 760 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 CD70P32970 193 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 NNMTP40261 264 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 CSKP41240 450 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 IRAK1P51617 712 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 RWDD2BP57060 319 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 GNA12Q03113 381 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 SLC20A2Q08357 652 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 POLD3Q15054 466 aaPredicted RBP18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 GEN1Q17RS7 908 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 FSCBQ5H9T9 825 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 MBLAC2Q68D91 279 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 RETSATQ6NUM9 610 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 ADIPOR2Q86V24 386 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 ZNF513Q8N8E2 541 aaPredicted RBP18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 WFDC5Q8TCV5 224 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 SLC8A2Q9UPR5 921 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 CAPN6Q9Y6Q1 641 aa18.36■□□□□ 0.53
SSSCA1-201ENST00000309328 ARHGAP42A6NI28 874 aa18.35■□□□□ 0.53
SSSCA1-201ENST00000309328 PRRT4C9JH25 899 aa18.35■□□□□ 0.53
SSSCA1-201ENST00000309328 RNF40O75150 1001 aa18.35■□□□□ 0.53
SSSCA1-201ENST00000309328 KIR2DL1P43626 348 aaPredicted RBP18.35■□□□□ 0.53
SSSCA1-201ENST00000309328 ST8SIA6P61647 398 aa18.35■□□□□ 0.53
SSSCA1-201ENST00000309328 ECT2LQ008S8 904 aa18.35■□□□□ 0.53
SSSCA1-201ENST00000309328 FZD5Q13467 585 aa18.35■□□□□ 0.53
SSSCA1-201ENST00000309328 TFDP2Q14188 446 aa18.35■□□□□ 0.53
SSSCA1-201ENST00000309328 PPP2R5EQ16537 467 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms