RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SFRP1Q8N474 314 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 GIPC3Q8TF64 312 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 S100ZQ8WXG8 99 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 MRPL39Q9NYK5 338 aaKnown RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 UBA2Q9UBT2 640 aaPredicted RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 IL6P05231 212 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 RP9Q8TA86 221 aaKnown RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 LNX1Q8TBB1 728 aaPredicted RBP17.66■□□□□ 0.42
SYNPO-201ENST00000307662 PADI4Q9UM07 663 aa17.66■□□□□ 0.42
SYNPO-201ENST00000307662 EDF1O60869 148 aaKnown RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 ZMPSTE24O75844 475 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 MICAL2O94851 1124 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 UQCRBP14927 111 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 VAV1P15498 845 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CCNA2P20248 432 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 RPS12P25398 132 aaKnown RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 DNAJB2P25686 324 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 FEN1P39748 380 aaKnown RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 TNK2Q07912 1038 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 ZNF484Q5JVG2 852 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CWF19L1Q69YN2 538 aaKnown RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 KCNT2Q6UVM3 1135 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 NEK10Q6ZWH5 1172 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 EPS8L1Q8TE68 723 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 BAP1Q92560 729 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 ARHGEF3Q9NR81 526 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CDH9Q9ULB4 789 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 PCDHA11Q9Y5I1 949 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 MAP2P11137 1827 aaKnown RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CDH3P22223 829 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 EIF4BP23588 611 aaKnown RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CHMP1BQ7LBR1 199 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 PTCD3Q96EY7 689 aaKnown RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 L3MBTL3Q96JM7 780 aaPredicted RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CCDC28BQ9BUN5 200 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CHID1Q9BWS9 393 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 SPAG4Q9NPE6 437 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 DYRK1BQ9Y463 629 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 DEPDC5O75140 1603 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 ASTN2O75129 1339 aaPredicted RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 EPHB6O15197 1021 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 IDH3BO43837 385 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 SLITRK3O94933 977 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 PCNAP12004 261 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 MYL12AP19105 171 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 OR1G1P47890 313 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 SPIRE1Q08AE8 756 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 GRIK3Q13003 919 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 ZNF513Q8N8E2 541 aaPredicted RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CENPIQ92674 756 aaPredicted RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 SLC7A5P2Q9GIP4 190 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CDHR5Q9HBB8 845 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 SLCO1B3Q9NPD5 702 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 ITGA11Q9UKX5 1188 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 F8VP50 259 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 ASS1P00966 412 aaKnown RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CCT3P49368 545 aaKnown RBP17.65■□□□□ 0.42
SYNPO-201ENST00000307662 CLCN3P51790 818 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 AMER2Q8N7J2 671 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 METTL6Q8TCB7 284 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 TBL1YQ9BQ87 522 aa17.65■□□□□ 0.42
SYNPO-201ENST00000307662 GJB6O95452 261 aa17.64■□□□□ 0.42
SYNPO-201ENST00000307662 NFIAQ12857 509 aa17.64■□□□□ 0.42
SYNPO-201ENST00000307662 RTL3Q8N8U3 475 aaKnown RBP17.64■□□□□ 0.42
SYNPO-201ENST00000307662 POC5Q8NA72 575 aa17.64■□□□□ 0.42
SYNPO-201ENST00000307662 ELMO3Q96BJ8 720 aa17.64■□□□□ 0.42
SYNPO-201ENST00000307662 INPP4AQ96PE3 977 aaPredicted RBP17.64■□□□□ 0.42
SYNPO-201ENST00000307662 ADGRE3Q9BY15 652 aa17.64■□□□□ 0.42
SYNPO-201ENST00000307662 CLK4Q9HAZ1 481 aaKnown RBP17.64■□□□□ 0.42
SYNPO-201ENST00000307662 CRNNQ9UBG3 495 aaPredicted RBP17.64■□□□□ 0.42
SYNPO-201ENST00000307662 MTF2Q9Y483 593 aaPredicted RBP17.64■□□□□ 0.42
SYNPO-201ENST00000307662 PRRG1O14668 218 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 BIRC5O15392 142 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 SEC22BO75396 215 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 HMGCRP04035 888 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 SNRPB2P08579 225 aaKnown RBP17.64■□□□□ 0.41
SYNPO-201ENST00000307662 TSPAN19P0C672 248 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 YY1P25490 414 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 TKTL1P51854 596 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 CELF6Q96J87 481 aaKnown RBP17.64■□□□□ 0.41
SYNPO-201ENST00000307662 DEFB129Q9H1M3 183 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 EURLQ9NYK6 297 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 KIF20BQ96Q89 1820 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 ERVK-10P10266 1014 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 HNRNPH3P31942 346 aaKnown RBP17.64■□□□□ 0.41
SYNPO-201ENST00000307662 CAP2P40123 477 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 CAMK2GQ13555 558 aaPredicted RBP17.64■□□□□ 0.41
SYNPO-201ENST00000307662 INO80DQ53TQ3 878 aaPredicted RBP17.64■□□□□ 0.41
SYNPO-201ENST00000307662 C10orf53Q8N6V4 93 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 BPIFB6Q8NFQ5 453 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 TAS2R13Q9NYV9 303 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 INVSQ9Y283 1065 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 PRR23AA6NEV1 266 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 PAEPP09466 180 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 FLT3P36888 993 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 RARRES1P49788 294 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 MTTPP55157 894 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 MZT2BQ6NZ67 158 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 DNAJC14Q6Y2X3 702 aaPredicted RBP17.64■□□□□ 0.41
SYNPO-201ENST00000307662 POLNQ7Z5Q5 900 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms