RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TBC1D3HP0C7X1 549 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 CKMT2P17540 419 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 ACADSBP45954 432 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 LRMPQ12912 555 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 TARDBPQ13148 414 aaKnown RBP eCLIP15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 DNAJC3Q13217 504 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 DCAF6Q58WW2 860 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 PRAMEF14Q5SWL7 426 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 TBC1D3GQ6DHY5 549 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 TBC1D3CQ6IPX1 549 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 SMYD4Q8IYR2 804 aaPredicted RBP15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 TBC1D3Q8IZP1 549 aaPredicted RBP15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 AADATQ8N5Z0 425 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 SLC39A7Q92504 469 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 SLC39A13Q96H72 371 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 BTN2A3PQ96KV6 586 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 GSDMAQ96QA5 445 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 SPAG5Q96R06 1193 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 NUCKS1Q9H1E3 243 aaKnown RBP15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 PRORYQ9H606 182 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 TJP2Q9UDY2 1190 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 DMTF1Q9Y222 760 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 ZNF462Q96JM2 2506 aa15.27■□□□□ 0.03
CCDC88B-201ENST00000301897 CAPN9O14815 690 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 GABBR2O75899 941 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 MOCS2O96007 188 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 IL1BP01584 269 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 MZF1P28698 734 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 PRCPP42785 496 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 FMO5P49326 533 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 FSCBQ5H9T9 825 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 ZNF658Q5TYW1 1059 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 TTC39BQ5VTQ0 682 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 SFMBT2Q5VUG0 894 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 FAM46CQ5VWP2 391 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 LGI2Q8N0V4 545 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 STK40Q8N2I9 435 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 PPM1KQ8N3J5 372 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 ADAM32Q8TC27 787 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 CLEC4CQ8WTT0 213 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 RFFLQ8WZ73 363 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 FGF11Q92914 225 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 FAM149B1Q96BN6 582 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 CRELD1Q96HD1 420 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 SLC12A6Q9UHW9 1150 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 SLCO3A1Q9UIG8 710 aa15.26■□□□□ 0.03
CCDC88B-201ENST00000301897 CBX4O00257 560 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 PIK3R2O00459 728 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 P4HA2O15460 535 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 SMC2O95347 1197 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 SLC2A3P11169 496 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 BRD2P25440 801 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 ACTN2P35609 894 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 CTSOP43234 321 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 RPL34P49207 117 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 VASPP50552 380 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 E2F1Q01094 437 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 MTA1Q13330 715 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 STIM1Q13586 685 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 MEA1Q16626 185 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 HS1BP3Q53T59 392 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 ANKRD40Q6AI12 368 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 MMS22LQ6ZRQ5 1243 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 CHSY1Q86X52 802 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 CFAP52Q8N1V2 620 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 ATP6V0D2Q8N8Y2 350 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 PTPRN2Q92932 1015 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 MIS12Q9H081 205 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 GOLPH3LQ9H4A5 285 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 CYTH4Q9UIA0 394 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 ZDHHC9Q9Y397 364 aa15.25■□□□□ 0.03
CCDC88B-201ENST00000301897 MGAQ8IWI9 3026 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 TEX51A0A1B0GUA7 166 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 CAPN8A6NHC0 703 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 F5H5T6 163 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 TLX3O43711 291 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 FYNP06241 537 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 TACR2P21452 398 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 ACP1P24666 158 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 ITPKBP27987 946 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 DRD3P35462 400 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 PLK1P53350 603 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 GCNT1Q02742 428 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 CCDC15Q0P6D6 951 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 BNIP3Q12983 259 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 STAT4Q14765 748 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 SETMARQ53H47 684 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 RABGAP1LQ5R372 815 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 TAC4Q86UU9 113 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 TRIM69Q86WT6 500 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 APCDD1Q8J025 514 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 STK32AQ8WU08 396 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 OR8D1Q8WZ84 308 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 FAM131CQ96AQ9 280 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 MYEOVQ96EZ4 313 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 RPL10LQ96L21 214 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 CEP63Q96MT8 703 aa15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 FCRL3Q96P31 734 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-201ENST00000301897 MED15Q96RN5 788 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms