RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 CPNE1Q99829 537 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 IL1RAPL1Q9NZN1 696 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 ARHGAP42A6NI28 874 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 INPPL1O15357 1258 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 MYL2P10916 166 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 SERPINB3P29508 390 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 SLC5A3P53794 718 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 ZBTB16Q05516 673 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 RWDD4Q6NW29 188 aaKnown RBP24.51■■□□□ 1.51
TRIM54-201ENST00000296098 ATP2A3Q93084 1043 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 TEKT5Q96M29 485 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 ABCC13Q9NSE7 274 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 PCDHB8Q9UN66 801 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 NEU3Q9UQ49 428 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 MYO16Q9Y6X6 1858 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 PDE1BQ01064 536 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 YWHAHQ04917 246 aaPredicted RBP24.51■■□□□ 1.51
TRIM54-201ENST00000296098 EIF4EBP2Q13542 120 aaPredicted RBP24.51■■□□□ 1.51
TRIM54-201ENST00000296098 PDE1CQ14123 709 aaPredicted RBP24.51■■□□□ 1.51
TRIM54-201ENST00000296098 FRG1Q14331 258 aaKnown RBP24.51■■□□□ 1.51
TRIM54-201ENST00000296098 BRMS1LQ5PSV4 323 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 CES4AQ5XG92 561 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 PGLYRP2Q96PD5 576 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 LNPEPQ9UIQ6 1025 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 ABT1Q9ULW3 272 aaKnown RBP24.51■■□□□ 1.51
TRIM54-201ENST00000296098 SQORQ9Y6N5 450 aa24.51■■□□□ 1.51
TRIM54-201ENST00000296098 TRAFD1O14545 582 aaPredicted RBP24.5■■□□□ 1.51
TRIM54-201ENST00000296098 USP1O94782 785 aa24.5■■□□□ 1.51
TRIM54-201ENST00000296098 SRGAP2BP0DMP2 458 aa24.5■■□□□ 1.51
TRIM54-201ENST00000296098 ELNP15502 786 aa24.5■■□□□ 1.51
TRIM54-201ENST00000296098 ZNF33AQ06730 810 aa24.5■■□□□ 1.51
TRIM54-201ENST00000296098 BTBD8Q5XKL5 378 aa24.5■■□□□ 1.51
TRIM54-201ENST00000296098 TMEM135Q86UB9 458 aa24.5■■□□□ 1.51
TRIM54-201ENST00000296098 DPF3Q92784 378 aa24.5■■□□□ 1.51
TRIM54-201ENST00000296098 SMOC2Q9H3U7 446 aa24.5■■□□□ 1.51
TRIM54-201ENST00000296098 KCNK4Q9NYG8 393 aa24.5■■□□□ 1.51
TRIM54-201ENST00000296098 FAM237BA0A1B0GVD1 139 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 SNNO75324 88 aaPredicted RBP24.49■■□□□ 1.51
TRIM54-201ENST00000296098 JCHAINP01591 159 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 GRIK1P39086 918 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 PRPSAP1Q14558 356 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 N4BP2L1Q5TBK1 243 aaPredicted RBP24.49■■□□□ 1.51
TRIM54-201ENST00000296098 GRTP1Q5TC63 336 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 CEP57Q86XR8 500 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 HAPLN3Q96S86 360 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 SIK2Q9H0K1 926 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 FBXO6Q9NRD1 293 aaPredicted RBP24.49■■□□□ 1.51
TRIM54-201ENST00000296098 EMCNQ9ULC0 261 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 DNAH12Q6ZR08 3092 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 IRX4P78413 519 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 DCDC2Q9UHG0 476 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 ADAM28Q9UKQ2 775 aa24.49■■□□□ 1.51
TRIM54-201ENST00000296098 C2orf71A6NGG8 1288 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 TMEM88BA6NKF7 163 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 DFFAO00273 331 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 TNFRSF10BO14763 440 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 PTPN4P29074 926 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 HTR7P34969 479 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 NPY2RP49146 381 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 STX3Q13277 289 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 ANKRD20A4Q4UJ75 823 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 FASTKD1Q53R41 847 aaKnown RBP24.48■■□□□ 1.51
TRIM54-201ENST00000296098 GLB1LQ6UWU2 654 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 CRLF3Q8IUI8 442 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 ARID3BQ8IVW6 561 aaPredicted RBP24.48■■□□□ 1.51
TRIM54-201ENST00000296098 ATPAF2Q8N5M1 289 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 ZSCAN18Q8TBC5 510 aaPredicted RBP24.48■■□□□ 1.51
TRIM54-201ENST00000296098 TBC1D31Q96DN5 1066 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 TSGA13Q96PP4 275 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 RBBP8Q99708 897 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 TUBB6Q9BUF5 446 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 TBC1D10AQ9BXI6 508 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 NUP205Q92621 2012 aa24.48■■□□□ 1.51
TRIM54-201ENST00000296098 ZCWPW2A0A1B0GU75 182 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 FGF10O15520 208 aaPredicted RBP24.47■■□□□ 1.51
TRIM54-201ENST00000296098 HOXC13P31276 330 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 CCR1P32246 355 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 CERCAMQ5T4B2 595 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 C16orf46Q6P387 395 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 PPP1R14CQ8TAE6 165 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 AGAP11Q8TF27 550 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 APOL2Q9BQE5 337 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 IL22Q9GZX6 179 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 MSI1O43347 362 aaKnown RBP24.47■■□□□ 1.51
TRIM54-201ENST00000296098 ATP9BO43861 1147 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 B4GALT3O60512 393 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 PLIN3O60664 434 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 PAGE1O75459 146 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 CABYRO75952 493 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 ALDH1A1P00352 501 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 CDK18Q07002 472 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 NAPEPLDQ6IQ20 393 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 CASP10Q92851 521 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 RGS18Q9NS28 235 aa24.47■■□□□ 1.51
TRIM54-201ENST00000296098 HBS1LQ9Y450 684 aaKnown RBP24.47■■□□□ 1.51
TRIM54-201ENST00000296098 MAGEB16A2A368 324 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 AP3B1O00203 1094 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 PSMD3O43242 534 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 WFS1O76024 890 aa24.46■■□□□ 1.51
TRIM54-201ENST00000296098 GSRP00390 522 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms