RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SKA1Q96BD8 255 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 RPRD1AQ96P16 312 aaPredicted RBP13.17□□□□□ -0.3
CD44-203ENST00000278386 NOX5Q96PH1 765 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 CCDC86Q9H6F5 360 aaKnown RBP13.17□□□□□ -0.3
CD44-203ENST00000278386 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.17□□□□□ -0.3
CD44-203ENST00000278386 TOR4AQ9NXH8 423 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 APEX2Q9UBZ4 518 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 FTSJ1Q9UET6 329 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 SLCO3A1Q9UIG8 710 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 RWDD2AQ9UIY3 292 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 SLC25A13Q9UJS0 675 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 BECN2A8MW95 431 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 HSF2BPO75031 334 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 C5AR1P21730 350 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 MZF1P28698 734 aaPredicted RBP13.16□□□□□ -0.3
CD44-203ENST00000278386 CCR1P32246 355 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 MTIF2P46199 727 aaKnown RBP13.16□□□□□ -0.3
CD44-203ENST00000278386 ADPRHP54922 357 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 CENPCQ03188 943 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 SULT2A1Q06520 285 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 NME3Q13232 169 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 SLC12A1Q13621 1099 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 ELAVL3Q14576 367 aaKnown RBP13.16□□□□□ -0.3
CD44-203ENST00000278386 ARID5BQ14865 1188 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 CAMK4Q16566 473 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 TPD52L1Q16890 204 aaPredicted RBP13.16□□□□□ -0.3
CD44-203ENST00000278386 EXOC3L4Q17RC7 722 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 KCNT1Q5JUK3 1230 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 OR6B2Q6IFH4 312 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 CCNI2Q6ZMN8 369 aaPredicted RBP13.16□□□□□ -0.3
CD44-203ENST00000278386 FAM183BPQ6ZVS7 135 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 AADATQ8N5Z0 425 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 MDM1Q8TC05 714 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 PPP1R13BQ96KQ4 1090 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 CPXM1Q96SM3 734 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 ORAI3Q9BRQ5 295 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 SYNCQ9H7C4 482 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 ADAMTS1Q9UHI8 967 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 DMXL2Q8TDJ6 3036 aa13.16□□□□□ -0.3
CD44-203ENST00000278386 VILLO15195 856 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 TNFSF14O43557 240 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 PCDHGA12O60330 932 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 DFNA5O60443 496 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 DAB1O75553 588 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 GLI1P08151 1106 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 VAV1P15498 845 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 GOT1P17174 413 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 CD38P28907 300 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 GGCXP38435 758 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 OXCT1P55809 520 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 PPP2CBP62714 309 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 PPP2CAP67775 309 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 ACCSLQ4AC99 568 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 EFHC1Q5JVL4 640 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 FBXL22Q6P050 247 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 DBX2Q6ZNG2 339 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 GATAD2AQ86YP4 633 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 GALNT15Q8N3T1 639 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 OR8D1Q8WZ84 308 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 SHC3Q92529 594 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 PTPRN2Q92932 1015 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 SERAC1Q96JX3 654 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 SLC2A13Q96QE2 648 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 SPAG5Q96R06 1193 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 ELF4Q99607 663 aaPredicted RBP13.15□□□□□ -0.3
CD44-203ENST00000278386 PRMT1Q99873 361 aaKnown RBP13.15□□□□□ -0.3
CD44-203ENST00000278386 ASNSD1Q9NWL6 643 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 KIAA1468Q9P260 1216 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 VANGL2Q9ULK5 521 aa13.15□□□□□ -0.3
CD44-203ENST00000278386 DOCK4Q8N1I0 1966 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 CACNA1GO43497 2377 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 MYLKQ15746 1914 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 TBC1D3DA0A087WVF3 549 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 TBC1D3IA0A087WXS9 549 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 TBC1D3EA0A087X179 549 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 TBC1D3KA0A087X1G2 549 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 A0A1B0GTQ1 180 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 TBC1D3FA6NER0 549 aaPredicted RBP13.14□□□□□ -0.31
CD44-203ENST00000278386 TBC1D3LB9A6J9 549 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 TAF4O00268 1085 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 PLK4O00444 970 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 BNIP3LO60238 219 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 ERBB2P04626 1255 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 WNT1P04628 370 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 ITGAVP06756 1048 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 TBC1D3HP0C7X1 549 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 KRT9P35527 623 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 CCR5P51681 352 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 PTK2Q05397 1052 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 POM121L1PQ3SYA9 428 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 SLC45A4Q5BKX6 768 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 TBC1D3GQ6DHY5 549 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 TBC1D3CQ6IPX1 549 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 CXorf57Q6NSI4 855 aaKnown RBP13.14□□□□□ -0.31
CD44-203ENST00000278386 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.14□□□□□ -0.31
CD44-203ENST00000278386 C11orf57Q6ZUT1 292 aaPredicted RBP13.14□□□□□ -0.31
CD44-203ENST00000278386 TMPRSS7Q7RTY8 843 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 DSG4Q86SJ6 1040 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 MARCH9Q86YJ5 346 aa13.14□□□□□ -0.31
CD44-203ENST00000278386 TBC1D3Q8IZP1 549 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms