RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 HDAC1Q13547 482 aaPredicted RBP25.55■■□□□ 1.68
SYNGAP1-227ENST00000638142 U2SURPO15042 1029 aaKnown RBP25.54■■□□□ 1.68
SYNGAP1-227ENST00000638142 DDX19BQ9UMR2 479 aa25.54■■□□□ 1.68
SYNGAP1-227ENST00000638142 TRIM35Q9UPQ4 493 aa25.54■■□□□ 1.68
SYNGAP1-227ENST00000638142 DIP2CQ9Y2E4 1556 aa25.54■■□□□ 1.68
SYNGAP1-227ENST00000638142 SRPK2P78362 688 aaKnown RBP25.54■■□□□ 1.68
SYNGAP1-227ENST00000638142 SLKQ9H2G2 1235 aaPredicted RBP25.54■■□□□ 1.68
SYNGAP1-227ENST00000638142 SLC52A1Q9NWF4 448 aa25.54■■□□□ 1.68
SYNGAP1-227ENST00000638142 PRKCSHP14314 528 aaPredicted RBP25.53■■□□□ 1.68
SYNGAP1-227ENST00000638142 TRIM27P14373 513 aa25.53■■□□□ 1.68
SYNGAP1-227ENST00000638142 IDI1Q13907 227 aa25.53■■□□□ 1.68
SYNGAP1-227ENST00000638142 SAFB2Q14151 953 aaKnown RBP eCLIP25.53■■□□□ 1.68
SYNGAP1-227ENST00000638142 TERF2IPQ9NYB0 399 aa25.53■■□□□ 1.68
SYNGAP1-227ENST00000638142 TBC1D2Q9BYX2 928 aa25.52■■□□□ 1.68
SYNGAP1-227ENST00000638142 GGNBP2Q9H3C7 697 aa25.52■■□□□ 1.68
SYNGAP1-227ENST00000638142 CLTCQ00610 1675 aaKnown RBP25.52■■□□□ 1.68
SYNGAP1-227ENST00000638142 PTPRMP28827 1452 aa25.52■■□□□ 1.68
SYNGAP1-227ENST00000638142 ATF7IPQ6VMQ6 1270 aa25.52■■□□□ 1.68
SYNGAP1-227ENST00000638142 SSH1Q8WYL5 1049 aa25.51■■□□□ 1.67
SYNGAP1-227ENST00000638142 PNNQ9H307 717 aaKnown RBP25.49■■□□□ 1.67
SYNGAP1-227ENST00000638142 FYB1O15117 783 aa25.49■■□□□ 1.67
SYNGAP1-227ENST00000638142 CD163L1Q9NR16 1453 aa25.48■■□□□ 1.67
SYNGAP1-227ENST00000638142 ITPRIPQ8IWB1 547 aa25.48■■□□□ 1.67
SYNGAP1-227ENST00000638142 STK26Q9P289 416 aa25.48■■□□□ 1.67
SYNGAP1-227ENST00000638142 CYB5RLQ6IPT4 315 aa25.47■■□□□ 1.67
SYNGAP1-227ENST00000638142 PNPLA6Q8IY17 1366 aa25.47■■□□□ 1.67
SYNGAP1-227ENST00000638142 KIF16BQ96L93 1317 aa25.46■■□□□ 1.67
SYNGAP1-227ENST00000638142 RAPGEF3O95398 923 aa25.46■■□□□ 1.67
SYNGAP1-227ENST00000638142 SMC5Q8IY18 1101 aa25.46■■□□□ 1.67
SYNGAP1-227ENST00000638142 POGKQ9P215 609 aa25.45■■□□□ 1.67
SYNGAP1-227ENST00000638142 TMEM131LA2VDJ0 1609 aa25.45■■□□□ 1.67
SYNGAP1-227ENST00000638142 RIPK4P57078 832 aa25.45■■□□□ 1.66
SYNGAP1-227ENST00000638142 NOB1Q9ULX3 412 aaKnown RBP25.45■■□□□ 1.66
SYNGAP1-227ENST00000638142 IPO8O15397 1037 aaKnown RBP25.44■■□□□ 1.66
SYNGAP1-227ENST00000638142 DIAPH1O60610 1272 aaKnown RBP25.44■■□□□ 1.66
SYNGAP1-227ENST00000638142 YTHDC2Q9H6S0 1430 aaKnown RBP25.44■■□□□ 1.66
SYNGAP1-227ENST00000638142 FAM43AQ8N2R8 423 aa25.44■■□□□ 1.66
SYNGAP1-227ENST00000638142 C22orf23Q9BZE7 217 aa25.44■■□□□ 1.66
SYNGAP1-227ENST00000638142 MYO5BQ9ULV0 1848 aa25.43■■□□□ 1.66
SYNGAP1-227ENST00000638142 PRAM1Q96QH2 718 aa25.43■■□□□ 1.66
SYNGAP1-227ENST00000638142 MINK1Q8N4C8 1332 aaPredicted RBP25.43■■□□□ 1.66
SYNGAP1-227ENST00000638142 HDGFL2Q7Z4V5 671 aaPredicted RBP25.42■■□□□ 1.66
SYNGAP1-227ENST00000638142 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.42■■□□□ 1.66
SYNGAP1-227ENST00000638142 CDC42BPGQ6DT37 1551 aa25.42■■□□□ 1.66
SYNGAP1-227ENST00000638142 PREX1Q8TCU6 1659 aa25.42■■□□□ 1.66
SYNGAP1-227ENST00000638142 ALDH1L2Q3SY69 923 aa25.42■■□□□ 1.66
SYNGAP1-227ENST00000638142 ZBTB40Q9NUA8 1239 aa25.42■■□□□ 1.66
SYNGAP1-227ENST00000638142 TMEM57Q8N5G2 664 aa25.41■■□□□ 1.66
SYNGAP1-227ENST00000638142 RICTORQ6R327 1708 aa25.4■■□□□ 1.66
SYNGAP1-227ENST00000638142 KIF20BQ96Q89 1820 aa25.39■■□□□ 1.66
SYNGAP1-227ENST00000638142 FCHSD2O94868 740 aa25.39■■□□□ 1.65
SYNGAP1-227ENST00000638142 MFAP1P55081 439 aaKnown RBP25.39■■□□□ 1.65
SYNGAP1-227ENST00000638142 ZNF428Q96B54 188 aa25.38■■□□□ 1.65
SYNGAP1-227ENST00000638142 ARHGEF40Q8TER5 1519 aa25.37■■□□□ 1.65
SYNGAP1-227ENST00000638142 L1TD1Q5T7N2 865 aaKnown RBP25.37■■□□□ 1.65
SYNGAP1-227ENST00000638142 LRRC7Q96NW7 1537 aa25.36■■□□□ 1.65
SYNGAP1-227ENST00000638142 BRPF1P55201 1214 aaPredicted RBP25.36■■□□□ 1.65
SYNGAP1-227ENST00000638142 PPIP5K1Q6PFW1 1433 aa25.36■■□□□ 1.65
SYNGAP1-227ENST00000638142 ALKQ9UM73 1620 aa25.34■■□□□ 1.65
SYNGAP1-227ENST00000638142 FAM135BQ49AJ0 1406 aa25.34■■□□□ 1.65
SYNGAP1-227ENST00000638142 NUCB1Q02818 461 aa25.34■■□□□ 1.65
SYNGAP1-227ENST00000638142 CDK19Q9BWU1 502 aa25.34■■□□□ 1.65
SYNGAP1-227ENST00000638142 CHMP5Q9NZZ3 219 aa25.34■■□□□ 1.65
SYNGAP1-227ENST00000638142 YEATS2Q9ULM3 1422 aa25.33■■□□□ 1.65
SYNGAP1-227ENST00000638142 MCM4P33991 863 aa25.31■■□□□ 1.64
SYNGAP1-227ENST00000638142 CABP1Q9NZU7 370 aa25.31■■□□□ 1.64
SYNGAP1-227ENST00000638142 RSPH6AQ9H0K4 717 aa25.31■■□□□ 1.64
SYNGAP1-227ENST00000638142 HSCBQ8IWL3 235 aa25.3■■□□□ 1.64
SYNGAP1-227ENST00000638142 CHMP4BQ9H444 224 aaKnown RBP25.3■■□□□ 1.64
SYNGAP1-227ENST00000638142 SENP3Q9H4L4 574 aaPredicted RBP25.3■■□□□ 1.64
SYNGAP1-227ENST00000638142 ATP7BP35670 1465 aa25.3■■□□□ 1.64
SYNGAP1-227ENST00000638142 PRKAR2BP31323 418 aa25.29■■□□□ 1.64
SYNGAP1-227ENST00000638142 RBM25P49756 843 aaKnown RBP25.29■■□□□ 1.64
SYNGAP1-227ENST00000638142 CALD1Q05682 793 aaKnown RBP25.28■■□□□ 1.64
SYNGAP1-227ENST00000638142 CHD1LQ86WJ1 897 aa25.28■■□□□ 1.64
SYNGAP1-227ENST00000638142 SPRYD3Q8NCJ5 442 aa25.28■■□□□ 1.64
SYNGAP1-227ENST00000638142 DLC1Q96QB1 1528 aa25.27■■□□□ 1.64
SYNGAP1-227ENST00000638142 ARHGAP45Q92619 1136 aa25.27■■□□□ 1.64
SYNGAP1-227ENST00000638142 POLKQ9UBT6 870 aa25.27■■□□□ 1.64
SYNGAP1-227ENST00000638142 PIK3R4Q99570 1358 aa25.26■■□□□ 1.63
SYNGAP1-227ENST00000638142 NFE2L2Q16236 605 aa25.26■■□□□ 1.63
SYNGAP1-227ENST00000638142 NCOA3Q9Y6Q9 1424 aa25.25■■□□□ 1.63
SYNGAP1-227ENST00000638142 LNPKQ9C0E8 428 aa25.25■■□□□ 1.63
SYNGAP1-227ENST00000638142 PTCH1Q13635 1447 aa25.25■■□□□ 1.63
SYNGAP1-227ENST00000638142 BMP2KLQ5H9B9 411 aa25.24■■□□□ 1.63
SYNGAP1-227ENST00000638142 SNX21Q969T3 373 aa25.24■■□□□ 1.63
SYNGAP1-227ENST00000638142 GCC1Q96CN9 775 aa25.24■■□□□ 1.63
SYNGAP1-227ENST00000638142 ZBTB7BO15156 539 aaPredicted RBP25.22■■□□□ 1.63
SYNGAP1-227ENST00000638142 VAMP4O75379 141 aa25.22■■□□□ 1.63
SYNGAP1-227ENST00000638142 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.22■■□□□ 1.63
SYNGAP1-227ENST00000638142 MRPL50Q8N5N7 158 aaKnown RBP25.22■■□□□ 1.63
SYNGAP1-227ENST00000638142 FSD2A1L4K1 749 aa25.21■■□□□ 1.63
SYNGAP1-227ENST00000638142 ZNF692Q9BU19 519 aaPredicted RBP25.21■■□□□ 1.63
SYNGAP1-227ENST00000638142 IFT57Q9NWB7 429 aa25.21■■□□□ 1.63
SYNGAP1-227ENST00000638142 GOLGA6L3A6NEY3 463 aa25.21■■□□□ 1.63
SYNGAP1-227ENST00000638142 GNAI1P63096 354 aa25.21■■□□□ 1.63
SYNGAP1-227ENST00000638142 FBXO31Q5XUX0 539 aaPredicted RBP25.21■■□□□ 1.63
SYNGAP1-227ENST00000638142 STAG3Q9UJ98 1225 aa25.2■■□□□ 1.62
SYNGAP1-227ENST00000638142 DDIT3P35638 169 aa25.19■■□□□ 1.62
SYNGAP1-227ENST00000638142 PHACTR3Q96KR7 559 aa25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms