RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 GGNBP2Q9H3C7 697 aa15.87■□□□□ 0.13
CLN6-223ENST00000637823 TTC21BQ7Z4L5 1316 aa15.87■□□□□ 0.13
CLN6-223ENST00000637823 MSH6P52701 1360 aa15.87■□□□□ 0.13
CLN6-223ENST00000637823 ESCO1Q5FWF5 840 aa15.86■□□□□ 0.13
CLN6-223ENST00000637823 YTHDC1Q96MU7 727 aaKnown RBP15.86■□□□□ 0.13
CLN6-223ENST00000637823 TTC21AQ8NDW8 1320 aa15.86■□□□□ 0.13
CLN6-223ENST00000637823 PNISRQ8TF01 805 aaKnown RBP15.85■□□□□ 0.13
CLN6-223ENST00000637823 SSH2Q76I76 1423 aa15.85■□□□□ 0.13
CLN6-223ENST00000637823 MAP2P11137 1827 aaKnown RBP15.84■□□□□ 0.13
CLN6-223ENST00000637823 C1orf167Q5SNV9 1468 aa15.84■□□□□ 0.13
CLN6-223ENST00000637823 KIF1AQ12756 1690 aa15.84■□□□□ 0.13
CLN6-223ENST00000637823 FAM9BQ8IZU0 186 aa15.84■□□□□ 0.13
CLN6-223ENST00000637823 NME9Q86XW9 330 aa15.83■□□□□ 0.12
CLN6-223ENST00000637823 SCAF1Q9H7N4 1312 aaKnown RBP15.83■□□□□ 0.12
CLN6-223ENST00000637823 MST1RQ04912 1400 aa15.83■□□□□ 0.12
CLN6-223ENST00000637823 TNNT2P45379 298 aaPredicted RBP15.82■□□□□ 0.12
CLN6-223ENST00000637823 COG3Q96JB2 828 aa15.82■□□□□ 0.12
CLN6-223ENST00000637823 ORAI2Q96SN7 254 aa15.82■□□□□ 0.12
CLN6-223ENST00000637823 PSME1Q06323 249 aa15.81■□□□□ 0.12
CLN6-223ENST00000637823 MTHFSP49914 203 aa15.79■□□□□ 0.12
CLN6-223ENST00000637823 ZRANB1Q9UGI0 708 aa15.79■□□□□ 0.12
CLN6-223ENST00000637823 USP31Q70CQ4 1352 aa15.78■□□□□ 0.12
CLN6-223ENST00000637823 CFAP53Q96M91 514 aa15.78■□□□□ 0.12
CLN6-223ENST00000637823 USP54Q70EL1 1684 aa15.78■□□□□ 0.12
CLN6-223ENST00000637823 AATKQ6ZMQ8 1374 aa15.77■□□□□ 0.12
CLN6-223ENST00000637823 PIK3C2AO00443 1686 aa15.77■□□□□ 0.12
CLN6-223ENST00000637823 CENPBP07199 599 aaPredicted RBP15.77■□□□□ 0.12
CLN6-223ENST00000637823 INSRP06213 1382 aa15.76■□□□□ 0.11
CLN6-223ENST00000637823 LTBP4Q8N2S1 1624 aa15.76■□□□□ 0.11
CLN6-223ENST00000637823 FOXO3O43524 673 aa15.76■□□□□ 0.11
CLN6-223ENST00000637823 PAK3O75914 559 aaPredicted RBP15.76■□□□□ 0.11
CLN6-223ENST00000637823 SLAIN2Q9P270 581 aa15.76■□□□□ 0.11
CLN6-223ENST00000637823 OVOS2A0A0J9YW53 1432 aa15.76■□□□□ 0.11
CLN6-223ENST00000637823 OVOS2Q6IE36 1432 aa15.76■□□□□ 0.11
CLN6-223ENST00000637823 TRPM3Q9HCF6 1732 aaPredicted RBP15.75■□□□□ 0.11
CLN6-223ENST00000637823 WDR43Q15061 677 aaKnown RBP eCLIP15.75■□□□□ 0.11
CLN6-223ENST00000637823 KRT28Q7Z3Y7 464 aa15.75■□□□□ 0.11
CLN6-223ENST00000637823 ABTB2Q8N961 1025 aa15.75■□□□□ 0.11
CLN6-223ENST00000637823 MARF1Q9Y4F3 1742 aaKnown RBP15.74■□□□□ 0.11
CLN6-223ENST00000637823 NLRP6P59044 892 aa15.74■□□□□ 0.11
CLN6-223ENST00000637823 POLKQ9UBT6 870 aa15.74■□□□□ 0.11
CLN6-223ENST00000637823 HNRNPUQ00839 825 aaKnown RBP eCLIP15.73■□□□□ 0.11
CLN6-223ENST00000637823 SHPRHQ149N8 1683 aa15.73■□□□□ 0.11
CLN6-223ENST00000637823 ADAMTS8Q9UP79 889 aa15.72■□□□□ 0.11
CLN6-223ENST00000637823 PNPLA6Q8IY17 1366 aa15.72■□□□□ 0.11
CLN6-223ENST00000637823 NPHP3Q7Z494 1330 aa15.71■□□□□ 0.11
CLN6-223ENST00000637823 SMG6Q86US8 1419 aaKnown RBP15.71■□□□□ 0.11
CLN6-223ENST00000637823 FBLN1P23142 703 aa15.7■□□□□ 0.1
CLN6-223ENST00000637823 BRINP3Q76B58 766 aa15.7■□□□□ 0.1
CLN6-223ENST00000637823 ALS2Q96Q42 1657 aa15.7■□□□□ 0.1
CLN6-223ENST00000637823 XPCQ01831 940 aaPredicted RBP15.69■□□□□ 0.1
CLN6-223ENST00000637823 NUDCQ9Y266 331 aa15.69■□□□□ 0.1
CLN6-223ENST00000637823 SBNO1A3KN83 1393 aa15.69■□□□□ 0.1
CLN6-223ENST00000637823 COL3A1P02461 1466 aaPredicted RBP15.68■□□□□ 0.1
CLN6-223ENST00000637823 CDK12Q9NYV4 1490 aaPredicted RBP15.68■□□□□ 0.1
CLN6-223ENST00000637823 PPM1GO15355 546 aaPredicted RBP15.68■□□□□ 0.1
CLN6-223ENST00000637823 DIAPH1O60610 1272 aaKnown RBP15.68■□□□□ 0.1
CLN6-223ENST00000637823 NUTM2GQ5VZR2 741 aa15.68■□□□□ 0.1
CLN6-223ENST00000637823 EMILIN1Q9Y6C2 1016 aa15.68■□□□□ 0.1
CLN6-223ENST00000637823 BLMP54132 1417 aaPredicted RBP15.68■□□□□ 0.1
CLN6-223ENST00000637823 PXDNQ92626 1479 aa15.67■□□□□ 0.1
CLN6-223ENST00000637823 RRS1Q15050 365 aaKnown RBP15.67■□□□□ 0.1
CLN6-223ENST00000637823 KCNH5Q8NCM2 988 aa15.66■□□□□ 0.1
CLN6-223ENST00000637823 DDX17Q92841 729 aaKnown RBP15.65■□□□□ 0.1
CLN6-223ENST00000637823 ZBED9Q6R2W3 1325 aa15.65■□□□□ 0.1
CLN6-223ENST00000637823 NHSL1Q5SYE7 1610 aa15.65■□□□□ 0.1
CLN6-223ENST00000637823 LTN1O94822 1766 aa15.64■□□□□ 0.1
CLN6-223ENST00000637823 KIF24Q5T7B8 1368 aa15.64■□□□□ 0.09
CLN6-223ENST00000637823 LMOD2Q6P5Q4 547 aa15.64■□□□□ 0.09
CLN6-223ENST00000637823 PEAK1Q9H792 1746 aa15.64■□□□□ 0.09
CLN6-223ENST00000637823 SLIT3O75094 1523 aa15.63■□□□□ 0.09
CLN6-223ENST00000637823 TNS3Q68CZ2 1445 aa15.63■□□□□ 0.09
CLN6-223ENST00000637823 SOX12O15370 315 aa15.63■□□□□ 0.09
CLN6-223ENST00000637823 USP19O94966 1318 aa15.63■□□□□ 0.09
CLN6-223ENST00000637823 SOS2Q07890 1332 aaPredicted RBP15.63■□□□□ 0.09
CLN6-223ENST00000637823 MAP3K19Q56UN5 1328 aa15.63■□□□□ 0.09
CLN6-223ENST00000637823 SPATA31A3Q5VYP0 1347 aa15.63■□□□□ 0.09
CLN6-223ENST00000637823 U2AF1L5P0DN76 240 aaPredicted RBP15.62■□□□□ 0.09
CLN6-223ENST00000637823 IL13P35225 146 aa15.62■□□□□ 0.09
CLN6-223ENST00000637823 AMPHP49418 695 aa15.62■□□□□ 0.09
CLN6-223ENST00000637823 U2AF1Q01081 240 aaKnown RBP eCLIP15.62■□□□□ 0.09
CLN6-223ENST00000637823 PNNQ9H307 717 aaKnown RBP15.62■□□□□ 0.09
CLN6-223ENST00000637823 NFAT5O94916 1531 aa15.62■□□□□ 0.09
CLN6-223ENST00000637823 ARHGEF10O15013 1369 aa15.62■□□□□ 0.09
CLN6-223ENST00000637823 U2SURPO15042 1029 aaKnown RBP15.61■□□□□ 0.09
CLN6-223ENST00000637823 GCP02774 474 aa15.61■□□□□ 0.09
CLN6-223ENST00000637823 NGEFQ8N5V2 710 aa15.61■□□□□ 0.09
CLN6-223ENST00000637823 RUNDC1Q96C34 613 aa15.61■□□□□ 0.09
CLN6-223ENST00000637823 FLT4P35916 1363 aa15.61■□□□□ 0.09
CLN6-223ENST00000637823 PHRF1Q9P1Y6 1649 aaKnown RBP15.61■□□□□ 0.09
CLN6-223ENST00000637823 ROBO1Q9Y6N7 1651 aa15.6■□□□□ 0.09
CLN6-223ENST00000637823 TOM1O60784 492 aa15.59■□□□□ 0.09
CLN6-223ENST00000637823 FCHSD2O94868 740 aa15.59■□□□□ 0.09
CLN6-223ENST00000637823 HSP90AB2PQ58FF8 381 aa15.59■□□□□ 0.09
CLN6-223ENST00000637823 CCDC146Q8IYE0 955 aa15.59■□□□□ 0.09
CLN6-223ENST00000637823 RTL1A6NKG5 1358 aa15.59■□□□□ 0.09
CLN6-223ENST00000637823 IQSEC2Q5JU85 1478 aa15.59■□□□□ 0.09
CLN6-223ENST00000637823 CRYBG1Q9Y4K1 1723 aa15.58■□□□□ 0.08
CLN6-223ENST00000637823 HOXC9P31274 260 aa15.58■□□□□ 0.08
CLN6-223ENST00000637823 EIF4A2Q14240 407 aaKnown RBP15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms