RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ST20-MTHFSA0A0A6YYL1 179 aa25.72■■□□□ 1.71
CLN3-259ENST00000637551 QTRT2Q9H974 415 aaKnown RBP25.72■■□□□ 1.71
CLN3-259ENST00000637551 CABP2Q9NPB3 220 aa25.72■■□□□ 1.71
CLN3-259ENST00000637551 AKAP12Q02952 1782 aa25.72■■□□□ 1.71
CLN3-259ENST00000637551 ACEP12821 1306 aa25.7■■□□□ 1.71
CLN3-259ENST00000637551 ABCA3Q99758 1704 aa25.7■■□□□ 1.7
CLN3-259ENST00000637551 CDCA8Q53HL2 280 aa25.68■■□□□ 1.7
CLN3-259ENST00000637551 ZNF692Q9BU19 519 aaPredicted RBP25.68■■□□□ 1.7
CLN3-259ENST00000637551 USP6P35125 1406 aa25.67■■□□□ 1.7
CLN3-259ENST00000637551 XPCQ01831 940 aaPredicted RBP25.67■■□□□ 1.7
CLN3-259ENST00000637551 CPSF1Q10570 1443 aaKnown RBP25.67■■□□□ 1.7
CLN3-259ENST00000637551 C8orf37Q96NL8 207 aa25.67■■□□□ 1.7
CLN3-259ENST00000637551 MON2Q7Z3U7 1717 aa25.66■■□□□ 1.7
CLN3-259ENST00000637551 CRYBG1Q9Y4K1 1723 aa25.66■■□□□ 1.7
CLN3-259ENST00000637551 TMF1P82094 1093 aa25.65■■□□□ 1.7
CLN3-259ENST00000637551 SSH2Q76I76 1423 aa25.64■■□□□ 1.7
CLN3-259ENST00000637551 CABP1Q9NZU7 370 aa25.64■■□□□ 1.7
CLN3-259ENST00000637551 NRKQ7Z2Y5 1582 aa25.64■■□□□ 1.69
CLN3-259ENST00000637551 EIF4G2P78344 907 aaKnown RBP eCLIP25.61■■□□□ 1.691e-9■■■■□ 22.4
CLN3-259ENST00000637551 NGLY1Q96IV0 654 aa25.61■■□□□ 1.69
CLN3-259ENST00000637551 USP54Q70EL1 1684 aa25.59■■□□□ 1.69
CLN3-259ENST00000637551 ZRANB1Q9UGI0 708 aa25.59■■□□□ 1.69
CLN3-259ENST00000637551 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.59■■□□□ 1.69
CLN3-259ENST00000637551 TTC21AQ8NDW8 1320 aa25.59■■□□□ 1.69
CLN3-259ENST00000637551 CD163L1Q9NR16 1453 aa25.58■■□□□ 1.69
CLN3-259ENST00000637551 NWD2Q9ULI1 1742 aa25.57■■□□□ 1.68
CLN3-259ENST00000637551 PHRF1Q9P1Y6 1649 aaKnown RBP25.57■■□□□ 1.68
CLN3-259ENST00000637551 TERF2IPQ9NYB0 399 aa25.57■■□□□ 1.68
CLN3-259ENST00000637551 FNBP4Q8N3X1 1017 aaPredicted RBP25.55■■□□□ 1.68
CLN3-259ENST00000637551 USP19O94966 1318 aa25.55■■□□□ 1.68
CLN3-259ENST00000637551 EDC4Q6P2E9 1401 aaKnown RBP25.54■■□□□ 1.68
CLN3-259ENST00000637551 PIK3C2AO00443 1686 aa25.54■■□□□ 1.68
CLN3-259ENST00000637551 KTN1Q86UP2 1357 aaKnown RBP25.54■■□□□ 1.68
CLN3-259ENST00000637551 PAK3O75914 559 aaPredicted RBP25.53■■□□□ 1.68
CLN3-259ENST00000637551 HDGFL2Q7Z4V5 671 aaPredicted RBP25.53■■□□□ 1.68
CLN3-259ENST00000637551 SLIT2O94813 1529 aa25.53■■□□□ 1.68
CLN3-259ENST00000637551 EP400Q96L91 3159 aa25.52■■□□□ 1.68
CLN3-259ENST00000637551 ADAMTS2O95450 1211 aa25.52■■□□□ 1.68
CLN3-259ENST00000637551 LMOD2Q6P5Q4 547 aa25.52■■□□□ 1.68
CLN3-259ENST00000637551 NLRP13Q86W25 1043 aa25.52■■□□□ 1.68
CLN3-259ENST00000637551 ANKRD36BQ8N2N9 1353 aa25.52■■□□□ 1.68
CLN3-259ENST00000637551 SLIT3O75094 1523 aa25.52■■□□□ 1.68
CLN3-259ENST00000637551 COL14A1Q05707 1796 aaKnown RBP25.51■■□□□ 1.67
CLN3-259ENST00000637551 MYOM1P52179 1685 aa25.5■■□□□ 1.67
CLN3-259ENST00000637551 ABTB2Q8N961 1025 aa25.5■■□□□ 1.67
CLN3-259ENST00000637551 A0A1W2PP64 1363 aa25.49■■□□□ 1.67
CLN3-259ENST00000637551 TTC21BQ7Z4L5 1316 aa25.49■■□□□ 1.67
CLN3-259ENST00000637551 HAP1P54257 671 aaPredicted RBP25.49■■□□□ 1.67
CLN3-259ENST00000637551 USP21Q9UK80 565 aa25.49■■□□□ 1.67
CLN3-259ENST00000637551 TRPC5Q9UL62 973 aaPredicted RBP25.49■■□□□ 1.67
CLN3-259ENST00000637551 PLCH1Q4KWH8 1693 aa25.48■■□□□ 1.67
CLN3-259ENST00000637551 CPDO75976 1380 aa25.48■■□□□ 1.67
CLN3-259ENST00000637551 USP31Q70CQ4 1352 aa25.47■■□□□ 1.67
CLN3-259ENST00000637551 HSPA5P11021 654 aaKnown RBP25.47■■□□□ 1.67
CLN3-259ENST00000637551 CCDC125Q86Z20 511 aa25.46■■□□□ 1.67
CLN3-259ENST00000637551 TMC1Q8TDI8 760 aa25.46■■□□□ 1.67
CLN3-259ENST00000637551 SLC12A5Q9H2X9 1139 aa25.46■■□□□ 1.67
CLN3-259ENST00000637551 ABCC6O95255 1503 aa25.45■■□□□ 1.66
CLN3-259ENST00000637551 BCL9LQ86UU0 1499 aa25.45■■□□□ 1.66
CLN3-259ENST00000637551 CABLES1Q8TDN4 633 aa25.43■■□□□ 1.66
CLN3-259ENST00000637551 ATRNO75882 1429 aa25.43■■□□□ 1.66
CLN3-259ENST00000637551 NRAPQ86VF7 1730 aa25.42■■□□□ 1.66
CLN3-259ENST00000637551 KCNH5Q8NCM2 988 aa25.41■■□□□ 1.66
CLN3-259ENST00000637551 NLRP6P59044 892 aa25.4■■□□□ 1.66
CLN3-259ENST00000637551 UNC5CLQ8IV45 518 aa25.39■■□□□ 1.66
CLN3-259ENST00000637551 LMO7Q8WWI1 1683 aa25.39■■□□□ 1.65
CLN3-259ENST00000637551 GCP02774 474 aa25.38■■□□□ 1.65
CLN3-259ENST00000637551 OVOS2A0A0J9YW53 1432 aa25.37■■□□□ 1.65
CLN3-259ENST00000637551 OVOS2Q6IE36 1432 aa25.37■■□□□ 1.65
CLN3-259ENST00000637551 NFAT5O94916 1531 aa25.37■■□□□ 1.65
CLN3-259ENST00000637551 KIAA0232Q92628 1395 aa25.36■■□□□ 1.65
CLN3-259ENST00000637551 PRDM11Q9NQV5 511 aa25.36■■□□□ 1.65
CLN3-259ENST00000637551 FAM83GA6ND36 823 aa25.35■■□□□ 1.65
CLN3-259ENST00000637551 KIF20BQ96Q89 1820 aa25.34■■□□□ 1.65
CLN3-259ENST00000637551 AATKQ6ZMQ8 1374 aa25.33■■□□□ 1.65
CLN3-259ENST00000637551 VPS72Q15906 364 aa25.32■■□□□ 1.64
CLN3-259ENST00000637551 NUTM2GQ5VZR2 741 aa25.32■■□□□ 1.64
CLN3-259ENST00000637551 COL18A1P39060 1754 aa25.3■■□□□ 1.64
CLN3-259ENST00000637551 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.29■■□□□ 1.64
CLN3-259ENST00000637551 GJD4Q96KN9 370 aaPredicted RBP25.28■■□□□ 1.64
CLN3-259ENST00000637551 BTG4Q9NY30 223 aa25.28■■□□□ 1.64
CLN3-259ENST00000637551 GLI3P10071 1580 aa25.27■■□□□ 1.64
CLN3-259ENST00000637551 ARHGEF25Q86VW2 580 aa25.27■■□□□ 1.64
CLN3-259ENST00000637551 NME9Q86XW9 330 aa25.27■■□□□ 1.64
CLN3-259ENST00000637551 CAMTA1Q9Y6Y1 1673 aa25.26■■□□□ 1.63
CLN3-259ENST00000637551 ZC3H6P61129 1189 aaKnown RBP25.26■■□□□ 1.63
CLN3-259ENST00000637551 BLMP54132 1417 aaPredicted RBP25.26■■□□□ 1.63
CLN3-259ENST00000637551 LTN1O94822 1766 aa25.26■■□□□ 1.63
CLN3-259ENST00000637551 ZEB1P37275 1124 aaPredicted RBP25.25■■□□□ 1.63
CLN3-259ENST00000637551 COG3Q96JB2 828 aa25.25■■□□□ 1.63
CLN3-259ENST00000637551 NSD3Q9BZ95 1437 aa25.25■■□□□ 1.63
CLN3-259ENST00000637551 ANKRD26Q9UPS8 1709 aa25.25■■□□□ 1.63
CLN3-259ENST00000637551 COL5A2P05997 1499 aaPredicted RBP25.24■■□□□ 1.63
CLN3-259ENST00000637551 NSD2O96028 1365 aa25.24■■□□□ 1.63
CLN3-259ENST00000637551 CGNL1Q0VF96 1302 aa25.24■■□□□ 1.63
CLN3-259ENST00000637551 KIF7Q2M1P5 1343 aa25.23■■□□□ 1.63
CLN3-259ENST00000637551 LRP5O75197 1615 aa25.23■■□□□ 1.63
CLN3-259ENST00000637551 KIF24Q5T7B8 1368 aa25.22■■□□□ 1.63
CLN3-259ENST00000637551 FYB1O15117 783 aa25.22■■□□□ 1.63
CLN3-259ENST00000637551 ONECUT3O60422 494 aaPredicted RBP25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms