RNA–Protein interactions for RNA: ENST00000637329.1

CLN6-219, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 1,204 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-219ENST00000637329 KIF1AQ12756 1690 aa20.7■□□□□ 0.9
CLN6-219ENST00000637329 PROSER2Q86WR7 435 aaPredicted RBP20.69■□□□□ 0.9
CLN6-219ENST00000637329 TMEM94Q12767 1356 aa20.68■□□□□ 0.9
CLN6-219ENST00000637329 SSH2Q76I76 1423 aa20.68■□□□□ 0.9
CLN6-219ENST00000637329 USP54Q70EL1 1684 aa20.67■□□□□ 0.9
CLN6-219ENST00000637329 PNISRQ8TF01 805 aaKnown RBP20.67■□□□□ 0.9
CLN6-219ENST00000637329 ACEP12821 1306 aa20.67■□□□□ 0.9
CLN6-219ENST00000637329 FYB1O15117 783 aa20.66■□□□□ 0.9
CLN6-219ENST00000637329 POTEAQ6S8J7 498 aa20.66■□□□□ 0.9
CLN6-219ENST00000637329 LRRC7Q96NW7 1537 aa20.66■□□□□ 0.9
CLN6-219ENST00000637329 C14orf37Q86TY3 774 aa20.65■□□□□ 0.9
CLN6-219ENST00000637329 XIRP1Q702N8 1843 aaKnown RBP20.64■□□□□ 0.9
CLN6-219ENST00000637329 TTC21AQ8NDW8 1320 aa20.64■□□□□ 0.89
CLN6-219ENST00000637329 C19orf44Q9H6X5 657 aa20.64■□□□□ 0.89
CLN6-219ENST00000637329 OVOS2A0A0J9YW53 1432 aa20.62■□□□□ 0.89
CLN6-219ENST00000637329 OVOS2Q6IE36 1432 aa20.62■□□□□ 0.89
CLN6-219ENST00000637329 NUTM2FA1L443 756 aa20.62■□□□□ 0.89
CLN6-219ENST00000637329 FAM9BQ8IZU0 186 aa20.62■□□□□ 0.89
CLN6-219ENST00000637329 SMG6Q86US8 1419 aaKnown RBP20.61■□□□□ 0.89
CLN6-219ENST00000637329 TTC21BQ7Z4L5 1316 aa20.61■□□□□ 0.89
CLN6-219ENST00000637329 GGNBP2Q9H3C7 697 aa20.61■□□□□ 0.89
CLN6-219ENST00000637329 C1orf167Q5SNV9 1468 aa20.61■□□□□ 0.89
CLN6-219ENST00000637329 BLMP54132 1417 aaPredicted RBP20.61■□□□□ 0.89
CLN6-219ENST00000637329 MST1RQ04912 1400 aa20.61■□□□□ 0.89
CLN6-219ENST00000637329 MSH6P52701 1360 aa20.6■□□□□ 0.89
CLN6-219ENST00000637329 NGDNQ8NEJ9 315 aaKnown RBP20.6■□□□□ 0.89
CLN6-219ENST00000637329 PIK3C2AO00443 1686 aa20.6■□□□□ 0.89
CLN6-219ENST00000637329 SHPRHQ149N8 1683 aa20.6■□□□□ 0.89
CLN6-219ENST00000637329 AATKQ6ZMQ8 1374 aa20.59■□□□□ 0.89
CLN6-219ENST00000637329 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.59■□□□□ 0.89
CLN6-219ENST00000637329 PHF8Q9UPP1 1060 aa20.59■□□□□ 0.89
CLN6-219ENST00000637329 RBM33Q96EV2 1170 aaKnown RBP20.58■□□□□ 0.89
CLN6-219ENST00000637329 USP31Q70CQ4 1352 aa20.57■□□□□ 0.88
CLN6-219ENST00000637329 COL3A1P02461 1466 aaPredicted RBP20.56■□□□□ 0.88
CLN6-219ENST00000637329 ATF3P18847 181 aa20.56■□□□□ 0.88
CLN6-219ENST00000637329 HNRNPUQ00839 825 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLN6-219ENST00000637329 CADPS2Q86UW7 1296 aa20.56■□□□□ 0.88
CLN6-219ENST00000637329 NME9Q86XW9 330 aa20.56■□□□□ 0.88
CLN6-219ENST00000637329 PMFBP1Q8TBY8 1022 aa20.56■□□□□ 0.88
CLN6-219ENST00000637329 COG3Q96JB2 828 aa20.56■□□□□ 0.88
CLN6-219ENST00000637329 CFAP53Q96M91 514 aa20.56■□□□□ 0.88
CLN6-219ENST00000637329 CDK12Q9NYV4 1490 aaPredicted RBP20.56■□□□□ 0.88
CLN6-219ENST00000637329 WDR43Q15061 677 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN6-219ENST00000637329 ZBED9Q6R2W3 1325 aa20.53■□□□□ 0.88
CLN6-219ENST00000637329 TRPM3Q9HCF6 1732 aaPredicted RBP20.53■□□□□ 0.88
CLN6-219ENST00000637329 MARF1Q9Y4F3 1742 aaKnown RBP20.53■□□□□ 0.88
CLN6-219ENST00000637329 PNPLA6Q8IY17 1366 aa20.52■□□□□ 0.88
CLN6-219ENST00000637329 TNNT2P45379 298 aaPredicted RBP20.52■□□□□ 0.88
CLN6-219ENST00000637329 ESCO1Q5FWF5 840 aa20.52■□□□□ 0.88
CLN6-219ENST00000637329 MTHFSP49914 203 aa20.51■□□□□ 0.87
CLN6-219ENST00000637329 UPF1Q92900 1129 aaKnown RBP eCLIP20.47■□□□□ 0.875e-10■■■■■ 44.4
CLN6-219ENST00000637329 MAP2P11137 1827 aaKnown RBP20.47■□□□□ 0.87
CLN6-219ENST00000637329 ORAI2Q96SN7 254 aa20.46■□□□□ 0.87
CLN6-219ENST00000637329 ALS2Q96Q42 1657 aa20.45■□□□□ 0.86
CLN6-219ENST00000637329 KIF24Q5T7B8 1368 aa20.45■□□□□ 0.86
CLN6-219ENST00000637329 SLIT3O75094 1523 aa20.44■□□□□ 0.86
CLN6-219ENST00000637329 POLKQ9UBT6 870 aa20.44■□□□□ 0.86
CLN6-219ENST00000637329 ZRANB1Q9UGI0 708 aa20.44■□□□□ 0.86
CLN6-219ENST00000637329 ADAMTS8Q9UP79 889 aa20.44■□□□□ 0.86
CLN6-219ENST00000637329 PHRF1Q9P1Y6 1649 aaKnown RBP20.43■□□□□ 0.86
CLN6-219ENST00000637329 PSME1Q06323 249 aa20.43■□□□□ 0.86
CLN6-219ENST00000637329 ZNF772Q68DY9 489 aaPredicted RBP20.42■□□□□ 0.86
CLN6-219ENST00000637329 NUDCQ9Y266 331 aa20.42■□□□□ 0.86
CLN6-219ENST00000637329 NPHP3Q7Z494 1330 aa20.42■□□□□ 0.86
CLN6-219ENST00000637329 SBNO1A3KN83 1393 aa20.42■□□□□ 0.86
CLN6-219ENST00000637329 PXDNQ92626 1479 aa20.42■□□□□ 0.86
CLN6-219ENST00000637329 NFAT5O94916 1531 aa20.42■□□□□ 0.86
CLN6-219ENST00000637329 PEAK1Q9H792 1746 aa20.41■□□□□ 0.86
CLN6-219ENST00000637329 RTL1A6NKG5 1358 aa20.4■□□□□ 0.86
CLN6-219ENST00000637329 MEX3CQ5U5Q3 659 aaKnown RBP20.4■□□□□ 0.86
CLN6-219ENST00000637329 NGEFQ8N5V2 710 aa20.4■□□□□ 0.86
CLN6-219ENST00000637329 NHSL1Q5SYE7 1610 aa20.39■□□□□ 0.86
CLN6-219ENST00000637329 NLRP6P59044 892 aa20.39■□□□□ 0.85
CLN6-219ENST00000637329 ABTB2Q8N961 1025 aa20.39■□□□□ 0.85
CLN6-219ENST00000637329 EMILIN1Q9Y6C2 1016 aa20.39■□□□□ 0.85
CLN6-219ENST00000637329 TNS3Q68CZ2 1445 aa20.38■□□□□ 0.85
CLN6-219ENST00000637329 FLT4P35916 1363 aa20.38■□□□□ 0.85
CLN6-219ENST00000637329 JCADQ9P266 1359 aa20.38■□□□□ 0.85
CLN6-219ENST00000637329 FOXO3O43524 673 aa20.38■□□□□ 0.85
CLN6-219ENST00000637329 DIAPH1O60610 1272 aaKnown RBP20.38■□□□□ 0.85
CLN6-219ENST00000637329 PAK3O75914 559 aaPredicted RBP20.38■□□□□ 0.85
CLN6-219ENST00000637329 USP19O94966 1318 aa20.37■□□□□ 0.85
CLN6-219ENST00000637329 KRT28Q7Z3Y7 464 aa20.37■□□□□ 0.85
CLN6-219ENST00000637329 BRINP3Q76B58 766 aa20.35■□□□□ 0.85
CLN6-219ENST00000637329 RGPD1P0DJD0 1748 aa20.35■□□□□ 0.85
CLN6-219ENST00000637329 ROBO1Q9Y6N7 1651 aa20.35■□□□□ 0.85
CLN6-219ENST00000637329 LTN1O94822 1766 aa20.34■□□□□ 0.85
CLN6-219ENST00000637329 RRS1Q15050 365 aaKnown RBP20.34■□□□□ 0.85
CLN6-219ENST00000637329 KCNH5Q8NCM2 988 aa20.34■□□□□ 0.85
CLN6-219ENST00000637329 SLAIN2Q9P270 581 aa20.34■□□□□ 0.85
CLN6-219ENST00000637329 ARHGEF10O15013 1369 aa20.34■□□□□ 0.85
CLN6-219ENST00000637329 CRYBG1Q9Y4K1 1723 aa20.33■□□□□ 0.85
CLN6-219ENST00000637329 MAP3K19Q56UN5 1328 aa20.33■□□□□ 0.85
CLN6-219ENST00000637329 RXRBP28702 533 aa20.33■□□□□ 0.85
CLN6-219ENST00000637329 NCBP3Q53F19 620 aaKnown RBP20.33■□□□□ 0.85
CLN6-219ENST00000637329 RUNDC1Q96C34 613 aa20.33■□□□□ 0.85
CLN6-219ENST00000637329 PNNQ9H307 717 aaKnown RBP20.33■□□□□ 0.85
CLN6-219ENST00000637329 ABCC6O95255 1503 aa20.32■□□□□ 0.84
CLN6-219ENST00000637329 PPM1GO15355 546 aaPredicted RBP20.32■□□□□ 0.84
CLN6-219ENST00000637329 U2AF1L5P0DN76 240 aaPredicted RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms