RNA–Protein interactions for RNA: ENST00000637212.1

LINC00643-207, long intergenic non-protein coding RNA 643, humanhuman

BASIC

Gene LINC00643, Length 734 nt, Biotype transcribed unitary pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-207ENST00000637212 TOPAZ1Q8N9V7 1692 aa18.16■□□□□ 0.5
LINC00643-207ENST00000637212 BRINP3Q76B58 766 aa18.16■□□□□ 0.5
LINC00643-207ENST00000637212 KRT28Q7Z3Y7 464 aa18.15■□□□□ 0.5
LINC00643-207ENST00000637212 MYBBP1AQ9BQG0 1328 aaKnown RBP18.15■□□□□ 0.5
LINC00643-207ENST00000637212 TOM1O60784 492 aa18.14■□□□□ 0.49
LINC00643-207ENST00000637212 CNGB1Q14028 1251 aaPredicted RBP18.14■□□□□ 0.49
LINC00643-207ENST00000637212 NPHP3Q7Z494 1330 aa18.14■□□□□ 0.49
LINC00643-207ENST00000637212 UBAP1LF5GYI3 381 aa18.13■□□□□ 0.49
LINC00643-207ENST00000637212 GGNBP2Q9H3C7 697 aa18.13■□□□□ 0.49
LINC00643-207ENST00000637212 ITSN1Q15811 1721 aa18.12■□□□□ 0.49
LINC00643-207ENST00000637212 XIRP1Q702N8 1843 aaKnown RBP18.12■□□□□ 0.49
LINC00643-207ENST00000637212 NME9Q86XW9 330 aa18.12■□□□□ 0.49
LINC00643-207ENST00000637212 COG3Q96JB2 828 aa18.12■□□□□ 0.49
LINC00643-207ENST00000637212 SCAF1Q9H7N4 1312 aaKnown RBP18.12■□□□□ 0.49
LINC00643-207ENST00000637212 PPP2R1AP30153 589 aa18.11■□□□□ 0.49
LINC00643-207ENST00000637212 NLRP13Q86W25 1043 aa18.11■□□□□ 0.49
LINC00643-207ENST00000637212 USP31Q70CQ4 1352 aa18.11■□□□□ 0.49
LINC00643-207ENST00000637212 PAK3O75914 559 aaPredicted RBP18.1■□□□□ 0.49
LINC00643-207ENST00000637212 SBNO1A3KN83 1393 aa18.09■□□□□ 0.49
LINC00643-207ENST00000637212 ABTB2Q8N961 1025 aa18.09■□□□□ 0.49
LINC00643-207ENST00000637212 NLRP6P59044 892 aa18.08■□□□□ 0.48
LINC00643-207ENST00000637212 KIF1AQ12756 1690 aa18.07■□□□□ 0.48
LINC00643-207ENST00000637212 SOS2Q07890 1332 aaPredicted RBP18.06■□□□□ 0.48
LINC00643-207ENST00000637212 ZRANB1Q9UGI0 708 aa18.06■□□□□ 0.48
LINC00643-207ENST00000637212 RGPD8O14715 1765 aaPredicted RBP18.06■□□□□ 0.48
LINC00643-207ENST00000637212 AKAP12Q02952 1782 aa18.06■□□□□ 0.48
LINC00643-207ENST00000637212 XPCQ01831 940 aaPredicted RBP18.05■□□□□ 0.48
LINC00643-207ENST00000637212 MON2Q7Z3U7 1717 aa18.05■□□□□ 0.48
LINC00643-207ENST00000637212 AATKQ6ZMQ8 1374 aa18.04■□□□□ 0.48
LINC00643-207ENST00000637212 TNNT2P45379 298 aaPredicted RBP18.04■□□□□ 0.48
LINC00643-207ENST00000637212 ILDR2Q71H61 639 aa18.04■□□□□ 0.48
LINC00643-207ENST00000637212 DDX17Q92841 729 aaKnown RBP18.04■□□□□ 0.48
LINC00643-207ENST00000637212 MRS2Q9HD23 443 aa18.04■□□□□ 0.48
LINC00643-207ENST00000637212 SPATA31A3Q5VYP0 1347 aa18.02■□□□□ 0.48
LINC00643-207ENST00000637212 OVOS2A0A0J9YW53 1432 aa18.02■□□□□ 0.48
LINC00643-207ENST00000637212 MTHFSP49914 203 aa18.02■□□□□ 0.48
LINC00643-207ENST00000637212 OVOS2Q6IE36 1432 aa18.02■□□□□ 0.48
LINC00643-207ENST00000637212 KCNH5Q8NCM2 988 aa18.02■□□□□ 0.48
LINC00643-207ENST00000637212 CCDC184Q52MB2 194 aa18.01■□□□□ 0.47
LINC00643-207ENST00000637212 POLKQ9UBT6 870 aa18.01■□□□□ 0.47
LINC00643-207ENST00000637212 PXDNQ92626 1479 aa18.01■□□□□ 0.47
LINC00643-207ENST00000637212 NRKQ7Z2Y5 1582 aa18■□□□□ 0.47
LINC00643-207ENST00000637212 LMOD2Q6P5Q4 547 aa18■□□□□ 0.47
LINC00643-207ENST00000637212 LRRC59Q96AG4 307 aaKnown RBP18■□□□□ 0.47
LINC00643-207ENST00000637212 CFAP53Q96M91 514 aa18■□□□□ 0.47
LINC00643-207ENST00000637212 ARHGEF10O15013 1369 aa18■□□□□ 0.47
LINC00643-207ENST00000637212 NUTM2GQ5VZR2 741 aa17.99■□□□□ 0.47
LINC00643-207ENST00000637212 PNISRQ8TF01 805 aaKnown RBP17.99■□□□□ 0.47
LINC00643-207ENST00000637212 USP19O94966 1318 aa17.98■□□□□ 0.47
LINC00643-207ENST00000637212 MED1Q15648 1581 aaPredicted RBP17.97■□□□□ 0.47
LINC00643-207ENST00000637212 INSRP06213 1382 aa17.97■□□□□ 0.47
LINC00643-207ENST00000637212 SOCS7O14512 581 aa17.97■□□□□ 0.47
LINC00643-207ENST00000637212 GCP02774 474 aa17.97■□□□□ 0.47
LINC00643-207ENST00000637212 PIP4K2BP78356 416 aa17.97■□□□□ 0.47
LINC00643-207ENST00000637212 TNS3Q68CZ2 1445 aa17.97■□□□□ 0.47
LINC00643-207ENST00000637212 PNPLA6Q8IY17 1366 aa17.96■□□□□ 0.47
LINC00643-207ENST00000637212 FBLN1P23142 703 aa17.95■□□□□ 0.46
LINC00643-207ENST00000637212 KIF24Q5T7B8 1368 aa17.94■□□□□ 0.46
LINC00643-207ENST00000637212 HSPA1LP34931 641 aa17.93■□□□□ 0.46
LINC00643-207ENST00000637212 RRS1Q15050 365 aaKnown RBP17.93■□□□□ 0.46
LINC00643-207ENST00000637212 NUDCQ9Y266 331 aa17.92■□□□□ 0.46
LINC00643-207ENST00000637212 EMILIN1Q9Y6C2 1016 aa17.92■□□□□ 0.46
LINC00643-207ENST00000637212 KIF20BQ96Q89 1820 aa17.92■□□□□ 0.46
LINC00643-207ENST00000637212 PIK3C2AO00443 1686 aa17.92■□□□□ 0.46
LINC00643-207ENST00000637212 MAP3K19Q56UN5 1328 aa17.92■□□□□ 0.46
LINC00643-207ENST00000637212 TRPM3Q9HCF6 1732 aaPredicted RBP17.92■□□□□ 0.46
LINC00643-207ENST00000637212 AHDC1Q5TGY3 1603 aaPredicted RBP17.91■□□□□ 0.46
LINC00643-207ENST00000637212 SMG6Q86US8 1419 aaKnown RBP17.91■□□□□ 0.46
LINC00643-207ENST00000637212 PPM1GO15355 546 aaPredicted RBP17.91■□□□□ 0.46
LINC00643-207ENST00000637212 ARHGEF25Q86VW2 580 aa17.91■□□□□ 0.46
LINC00643-207ENST00000637212 ANKRD26Q9UPS8 1709 aa17.91■□□□□ 0.46
LINC00643-207ENST00000637212 SOX12O15370 315 aa17.9■□□□□ 0.46
LINC00643-207ENST00000637212 DIAPH1O60610 1272 aaKnown RBP17.9■□□□□ 0.46
LINC00643-207ENST00000637212 AMPHP49418 695 aa17.9■□□□□ 0.46
LINC00643-207ENST00000637212 FAM9BQ8IZU0 186 aa17.9■□□□□ 0.46
LINC00643-207ENST00000637212 WDR43Q15061 677 aaKnown RBP eCLIP17.89■□□□□ 0.45
LINC00643-207ENST00000637212 IP6K1Q92551 441 aa17.89■□□□□ 0.45
LINC00643-207ENST00000637212 USP54Q70EL1 1684 aa17.89■□□□□ 0.45
LINC00643-207ENST00000637212 ROBO1Q9Y6N7 1651 aa17.89■□□□□ 0.45
LINC00643-207ENST00000637212 SLIT3O75094 1523 aa17.88■□□□□ 0.45
LINC00643-207ENST00000637212 NHSL1Q5SYE7 1610 aa17.88■□□□□ 0.45
LINC00643-207ENST00000637212 IL13P35225 146 aa17.87■□□□□ 0.45
LINC00643-207ENST00000637212 CABLES1Q8TDN4 633 aa17.87■□□□□ 0.45
LINC00643-207ENST00000637212 ALS2Q96Q42 1657 aa17.87■□□□□ 0.45
LINC00643-207ENST00000637212 HOXC9P31274 260 aa17.86■□□□□ 0.45
LINC00643-207ENST00000637212 ADAMTS8Q9UP79 889 aa17.86■□□□□ 0.45
LINC00643-207ENST00000637212 RTL1A6NKG5 1358 aa17.86■□□□□ 0.45
LINC00643-207ENST00000637212 FLT4P35916 1363 aa17.86■□□□□ 0.45
LINC00643-207ENST00000637212 CDK12Q9NYV4 1490 aaPredicted RBP17.86■□□□□ 0.45
LINC00643-207ENST00000637212 CPDO75976 1380 aa17.85■□□□□ 0.45
LINC00643-207ENST00000637212 HSP90AB2PQ58FF8 381 aa17.85■□□□□ 0.45
LINC00643-207ENST00000637212 NFAT5O94916 1531 aa17.84■□□□□ 0.45
LINC00643-207ENST00000637212 ZC3H6P61129 1189 aaKnown RBP17.84■□□□□ 0.45
LINC00643-207ENST00000637212 PNNQ9H307 717 aaKnown RBP17.84■□□□□ 0.45
LINC00643-207ENST00000637212 HAP1P54257 671 aaPredicted RBP17.83■□□□□ 0.44
LINC00643-207ENST00000637212 PLEKHG5O94827 1062 aa17.82■□□□□ 0.44
LINC00643-207ENST00000637212 U2AF1L5P0DN76 240 aaPredicted RBP17.82■□□□□ 0.44
LINC00643-207ENST00000637212 U2AF1Q01081 240 aaKnown RBP eCLIP17.82■□□□□ 0.44
LINC00643-207ENST00000637212 EIF4A2Q14240 407 aaKnown RBP17.82■□□□□ 0.44
LINC00643-207ENST00000637212 COL3A1P02461 1466 aaPredicted RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms