RNA–Protein interactions for RNA: ENST00000636674.1

CLN6-215, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 2,005 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-215ENST00000636674 TNNQ9UQP3 1299 aa18.56■□□□□ 0.56
CLN6-215ENST00000636674 ZKSCAN2Q63HK3 967 aa18.56■□□□□ 0.56
CLN6-215ENST00000636674 U2AF1L5P0DN76 240 aaPredicted RBP18.55■□□□□ 0.56
CLN6-215ENST00000636674 U2AF1Q01081 240 aaKnown RBP eCLIP18.55■□□□□ 0.56
CLN6-215ENST00000636674 UPF2Q9HAU5 1272 aaKnown RBP18.55■□□□□ 0.56
CLN6-215ENST00000636674 CDC42BPGQ6DT37 1551 aa18.55■□□□□ 0.56
CLN6-215ENST00000636674 IL16Q14005 1332 aa18.55■□□□□ 0.56
CLN6-215ENST00000636674 PLEKHF1Q96S99 279 aa18.54■□□□□ 0.56
CLN6-215ENST00000636674 MYO5BQ9ULV0 1848 aa18.54■□□□□ 0.56
CLN6-215ENST00000636674 ATAD2Q6PL18 1390 aa18.54■□□□□ 0.56
CLN6-215ENST00000636674 TMEM131LA2VDJ0 1609 aa18.54■□□□□ 0.56
CLN6-215ENST00000636674 BCL2L13Q9BXK5 485 aa18.53■□□□□ 0.56
CLN6-215ENST00000636674 C3P01024 1663 aa18.53■□□□□ 0.56
CLN6-215ENST00000636674 PREX1Q8TCU6 1659 aa18.53■□□□□ 0.56
CLN6-215ENST00000636674 DZIP1LQ8IYY4 767 aaKnown RBP18.52■□□□□ 0.56
CLN6-215ENST00000636674 KIF20BQ96Q89 1820 aa18.52■□□□□ 0.56
CLN6-215ENST00000636674 CD163L1Q9NR16 1453 aa18.52■□□□□ 0.56
CLN6-215ENST00000636674 ANTXR1Q9H6X2 564 aa18.52■□□□□ 0.55
CLN6-215ENST00000636674 HDAC1Q13547 482 aaPredicted RBP18.5■□□□□ 0.55
CLN6-215ENST00000636674 CABP2Q9NPB3 220 aa18.5■□□□□ 0.55
CLN6-215ENST00000636674 BRPF3Q9ULD4 1205 aa18.5■□□□□ 0.55
CLN6-215ENST00000636674 TMPOP42166 694 aaKnown RBP18.49■□□□□ 0.55
CLN6-215ENST00000636674 FTSJ3Q8IY81 847 aaKnown RBP18.49■□□□□ 0.55
CLN6-215ENST00000636674 SLC52A1Q9NWF4 448 aa18.49■□□□□ 0.55
CLN6-215ENST00000636674 PNPLA6Q8IY17 1366 aa18.49■□□□□ 0.55
CLN6-215ENST00000636674 ESF1Q9H501 851 aaKnown RBP18.49■□□□□ 0.55
CLN6-215ENST00000636674 PPP6R1Q9UPN7 881 aa18.49■□□□□ 0.55
CLN6-215ENST00000636674 TRIM35Q9UPQ4 493 aa18.49■□□□□ 0.55
CLN6-215ENST00000636674 SETD1BQ9UPS6 1966 aaKnown RBP18.48■□□□□ 0.55
CLN6-215ENST00000636674 DDX19BQ9UMR2 479 aa18.48■□□□□ 0.55
CLN6-215ENST00000636674 TRIM27P14373 513 aa18.47■□□□□ 0.55
CLN6-215ENST00000636674 SMC4Q9NTJ3 1288 aa18.47■□□□□ 0.55
CLN6-215ENST00000636674 EXOSC9Q06265 439 aaKnown RBP18.46■□□□□ 0.55
CLN6-215ENST00000636674 IDI1Q13907 227 aa18.45■□□□□ 0.54
CLN6-215ENST00000636674 ATF7IPQ6VMQ6 1270 aa18.45■□□□□ 0.54
CLN6-215ENST00000636674 TSR2Q969E8 191 aaKnown RBP18.45■□□□□ 0.54
CLN6-215ENST00000636674 TBC1D2Q9BYX2 928 aa18.45■□□□□ 0.54
CLN6-215ENST00000636674 TERF2IPQ9NYB0 399 aa18.45■□□□□ 0.54
CLN6-215ENST00000636674 YTHDC2Q9H6S0 1430 aaKnown RBP18.45■□□□□ 0.54
CLN6-215ENST00000636674 SMC5Q8IY18 1101 aa18.44■□□□□ 0.54
CLN6-215ENST00000636674 SSH1Q8WYL5 1049 aa18.44■□□□□ 0.54
CLN6-215ENST00000636674 LMTK3Q96Q04 1460 aa18.44■□□□□ 0.54
CLN6-215ENST00000636674 PPIP5K1Q6PFW1 1433 aa18.44■□□□□ 0.54
CLN6-215ENST00000636674 KIF16BQ96L93 1317 aa18.44■□□□□ 0.54
CLN6-215ENST00000636674 FYB1O15117 783 aa18.44■□□□□ 0.54
CLN6-215ENST00000636674 PLPPR3Q6T4P5 718 aa18.44■□□□□ 0.54
CLN6-215ENST00000636674 PNNQ9H307 717 aaKnown RBP18.44■□□□□ 0.54
CLN6-215ENST00000636674 LRRC7Q96NW7 1537 aa18.43■□□□□ 0.54
CLN6-215ENST00000636674 CEBPAP49715 358 aaPredicted RBP18.43■□□□□ 0.54
CLN6-215ENST00000636674 SRPK2P78362 688 aaKnown RBP18.43■□□□□ 0.54
CLN6-215ENST00000636674 RTN4Q9NQC3 1192 aaKnown RBP18.43■□□□□ 0.54
CLN6-215ENST00000636674 NUTM2DQ5VT03 806 aaPredicted RBP18.42■□□□□ 0.54
CLN6-215ENST00000636674 GGNBP2Q9H3C7 697 aa18.42■□□□□ 0.54
CLN6-215ENST00000636674 ALKQ9UM73 1620 aa18.42■□□□□ 0.54
CLN6-215ENST00000636674 DLC1Q96QB1 1528 aa18.42■□□□□ 0.54
CLN6-215ENST00000636674 U2SURPO15042 1029 aaKnown RBP18.42■□□□□ 0.54
CLN6-215ENST00000636674 SLKQ9H2G2 1235 aaPredicted RBP18.42■□□□□ 0.54
CLN6-215ENST00000636674 ALDH1L2Q3SY69 923 aa18.41■□□□□ 0.54
CLN6-215ENST00000636674 FAM135BQ49AJ0 1406 aa18.4■□□□□ 0.54
CLN6-215ENST00000636674 BRPF1P55201 1214 aaPredicted RBP18.4■□□□□ 0.54
CLN6-215ENST00000636674 ZNF428Q96B54 188 aa18.4■□□□□ 0.54
CLN6-215ENST00000636674 ZBTB40Q9NUA8 1239 aa18.4■□□□□ 0.54
CLN6-215ENST00000636674 ATP7BP35670 1465 aa18.4■□□□□ 0.54
CLN6-215ENST00000636674 DIAPH1O60610 1272 aaKnown RBP18.39■□□□□ 0.53
CLN6-215ENST00000636674 ITPRIPQ8IWB1 547 aa18.39■□□□□ 0.53
CLN6-215ENST00000636674 POGKQ9P215 609 aa18.39■□□□□ 0.53
CLN6-215ENST00000636674 IPO8O15397 1037 aaKnown RBP18.39■□□□□ 0.53
CLN6-215ENST00000636674 SAFB2Q14151 953 aaKnown RBP eCLIP18.38■□□□□ 0.53
CLN6-215ENST00000636674 C22orf23Q9BZE7 217 aa18.38■□□□□ 0.53
CLN6-215ENST00000636674 NOB1Q9ULX3 412 aaKnown RBP18.38■□□□□ 0.53
CLN6-215ENST00000636674 SETD1AO15047 1707 aaKnown RBP18.37■□□□□ 0.53
CLN6-215ENST00000636674 RIPK4P57078 832 aa18.37■□□□□ 0.53
CLN6-215ENST00000636674 HDGFL2Q7Z4V5 671 aaPredicted RBP18.37■□□□□ 0.53
CLN6-215ENST00000636674 PRAM1Q96QH2 718 aa18.37■□□□□ 0.53
CLN6-215ENST00000636674 FCHSD2O94868 740 aa18.37■□□□□ 0.53
CLN6-215ENST00000636674 TMEM57Q8N5G2 664 aa18.37■□□□□ 0.53
CLN6-215ENST00000636674 STK26Q9P289 416 aa18.37■□□□□ 0.53
CLN6-215ENST00000636674 NCOA3Q9Y6Q9 1424 aa18.36■□□□□ 0.53
CLN6-215ENST00000636674 MINK1Q8N4C8 1332 aaPredicted RBP18.36■□□□□ 0.53
CLN6-215ENST00000636674 PIK3R4Q99570 1358 aa18.36■□□□□ 0.53
CLN6-215ENST00000636674 L1TD1Q5T7N2 865 aaKnown RBP18.35■□□□□ 0.53
CLN6-215ENST00000636674 FAM43AQ8N2R8 423 aa18.35■□□□□ 0.53
CLN6-215ENST00000636674 PTCH1Q13635 1447 aa18.34■□□□□ 0.53
CLN6-215ENST00000636674 NUCB1Q02818 461 aa18.34■□□□□ 0.53
CLN6-215ENST00000636674 RSPH6AQ9H0K4 717 aa18.33■□□□□ 0.52
CLN6-215ENST00000636674 CHMP5Q9NZZ3 219 aa18.33■□□□□ 0.52
CLN6-215ENST00000636674 MAP2P11137 1827 aaKnown RBP18.33■□□□□ 0.52
CLN6-215ENST00000636674 MFAP1P55081 439 aaKnown RBP18.32■□□□□ 0.52
CLN6-215ENST00000636674 ZNF142P52746 1687 aaPredicted RBP18.32■□□□□ 0.52
CLN6-215ENST00000636674 RBM25P49756 843 aaKnown RBP18.32■□□□□ 0.52
CLN6-215ENST00000636674 CDK19Q9BWU1 502 aa18.32■□□□□ 0.52
CLN6-215ENST00000636674 MCM4P33991 863 aa18.31■□□□□ 0.52
CLN6-215ENST00000636674 CDK12Q9NYV4 1490 aaPredicted RBP18.31■□□□□ 0.52
CLN6-215ENST00000636674 ARHGAP45Q92619 1136 aa18.3■□□□□ 0.52
CLN6-215ENST00000636674 CHMP4BQ9H444 224 aaKnown RBP18.3■□□□□ 0.52
CLN6-215ENST00000636674 ANO8Q9HCE9 1232 aaPredicted RBP18.3■□□□□ 0.52
CLN6-215ENST00000636674 CALD1Q05682 793 aaKnown RBP18.29■□□□□ 0.52
CLN6-215ENST00000636674 SNX21Q969T3 373 aa18.29■□□□□ 0.52
CLN6-215ENST00000636674 CABP1Q9NZU7 370 aa18.28■□□□□ 0.52
CLN6-215ENST00000636674 NFE2L2Q16236 605 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 202.8 ms