RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 KIAA1210Q9ULL0 1709 aa25.45■■□□□ 1.66
CLN3-247ENST00000636351 WASLO00401 505 aaPredicted RBP25.44■■□□□ 1.66
CLN3-247ENST00000636351 ALS2Q96Q42 1657 aa25.42■■□□□ 1.66
CLN3-247ENST00000636351 ONECUT3O60422 494 aaPredicted RBP25.42■■□□□ 1.66
CLN3-247ENST00000636351 DEFB132Q7Z7B7 95 aa25.41■■□□□ 1.66
CLN3-247ENST00000636351 NRAPQ86VF7 1730 aa25.4■■□□□ 1.66
CLN3-247ENST00000636351 KRT27Q7Z3Y8 459 aa25.4■■□□□ 1.66
CLN3-247ENST00000636351 NGDNQ8NEJ9 315 aaKnown RBP25.4■■□□□ 1.66
CLN3-247ENST00000636351 BTG4Q9NY30 223 aa25.4■■□□□ 1.66
CLN3-247ENST00000636351 A0A0G2JS52 829 aa25.39■■□□□ 1.66
CLN3-247ENST00000636351 MYT1Q01538 1121 aa25.39■■□□□ 1.66
CLN3-247ENST00000636351 SF3B2Q13435 895 aaKnown RBP25.39■■□□□ 1.66
CLN3-247ENST00000636351 NBPF1Q3BBV0 1214 aa25.38■■□□□ 1.65
CLN3-247ENST00000636351 TRPM1Q7Z4N2 1603 aa25.37■■□□□ 1.65
CLN3-247ENST00000636351 COL14A1Q05707 1796 aaKnown RBP25.37■■□□□ 1.65
CLN3-247ENST00000636351 ROCK2O75116 1388 aaKnown RBP25.37■■□□□ 1.65
CLN3-247ENST00000636351 PAK3O75914 559 aaPredicted RBP25.36■■□□□ 1.65
CLN3-247ENST00000636351 FAM98CQ17RN3 349 aaKnown RBP25.36■■□□□ 1.65
CLN3-247ENST00000636351 NBPF8Q3BBV2 869 aa25.36■■□□□ 1.65
CLN3-247ENST00000636351 ARHGEF28Q8N1W1 1705 aaKnown RBP25.36■■□□□ 1.65
CLN3-247ENST00000636351 ATP7BP35670 1465 aa25.35■■□□□ 1.65
CLN3-247ENST00000636351 CRYBG1Q9Y4K1 1723 aa25.34■■□□□ 1.65
CLN3-247ENST00000636351 NUDT16Q96DE0 195 aaKnown RBP25.32■■□□□ 1.64
CLN3-247ENST00000636351 TIMELESSQ9UNS1 1208 aa25.32■■□□□ 1.64
CLN3-247ENST00000636351 ITSN1Q15811 1721 aa25.31■■□□□ 1.64
CLN3-247ENST00000636351 PRDM11Q9NQV5 511 aa25.3■■□□□ 1.64
CLN3-247ENST00000636351 SPATA31A5Q5VU36 1347 aa25.29■■□□□ 1.64
CLN3-247ENST00000636351 SPATA31A7Q8IWB4 1347 aa25.29■■□□□ 1.64
CLN3-247ENST00000636351 CDK19Q9BWU1 502 aa25.28■■□□□ 1.64
CLN3-247ENST00000636351 KIAA0232Q92628 1395 aa25.26■■□□□ 1.63
CLN3-247ENST00000636351 BAG6P46379 1132 aa25.25■■□□□ 1.63
CLN3-247ENST00000636351 FAM182BQ5T319 152 aa25.25■■□□□ 1.63
CLN3-247ENST00000636351 CARD11Q9BXL7 1154 aa25.25■■□□□ 1.63
CLN3-247ENST00000636351 PHRF1Q9P1Y6 1649 aaKnown RBP25.24■■□□□ 1.63
CLN3-247ENST00000636351 CHRNA2Q15822 529 aa25.24■■□□□ 1.63
CLN3-247ENST00000636351 NUTM2GQ5VZR2 741 aa25.24■■□□□ 1.63
CLN3-247ENST00000636351 TOPAZ1Q8N9V7 1692 aa25.23■■□□□ 1.63
CLN3-247ENST00000636351 THSD7AQ9UPZ6 1657 aa25.23■■□□□ 1.63
CLN3-247ENST00000636351 POLR3AO14802 1390 aaPredicted RBP25.22■■□□□ 1.63
CLN3-247ENST00000636351 ACEP12821 1306 aa25.22■■□□□ 1.63
CLN3-247ENST00000636351 CENPJQ9HC77 1338 aaPredicted RBP25.21■■□□□ 1.63
CLN3-247ENST00000636351 ZC3H6P61129 1189 aaKnown RBP25.21■■□□□ 1.63
CLN3-247ENST00000636351 CCDC61Q9Y6R9 512 aa25.21■■□□□ 1.63
CLN3-247ENST00000636351 STRN4Q9NRL3 753 aa25.2■■□□□ 1.62
CLN3-247ENST00000636351 SPATA31A1Q5TZJ5 1347 aa25.19■■□□□ 1.62
CLN3-247ENST00000636351 PSDA5PKW4 1024 aaPredicted RBP25.18■■□□□ 1.62
CLN3-247ENST00000636351 RGPD1P0DJD0 1748 aa25.17■■□□□ 1.62
CLN3-247ENST00000636351 PLEKHG3A1L390 1219 aa25.17■■□□□ 1.62
CLN3-247ENST00000636351 EN1Q05925 392 aaPredicted RBP25.17■■□□□ 1.62
CLN3-247ENST00000636351 QRICH2Q9H0J4 1663 aa25.17■■□□□ 1.62
CLN3-247ENST00000636351 NRKQ7Z2Y5 1582 aa25.15■■□□□ 1.62
CLN3-247ENST00000636351 ABTB2Q8N961 1025 aa25.14■■□□□ 1.62
CLN3-247ENST00000636351 USP35Q9P2H5 1018 aa25.14■■□□□ 1.62
CLN3-247ENST00000636351 LRP5O75197 1615 aa25.14■■□□□ 1.61
CLN3-247ENST00000636351 SRPK2P78362 688 aaKnown RBP25.13■■□□□ 1.61
CLN3-247ENST00000636351 PPIP5K1Q6PFW1 1433 aa25.12■■□□□ 1.61
CLN3-247ENST00000636351 SSH2Q76I76 1423 aa25.12■■□□□ 1.61
CLN3-247ENST00000636351 TNS1Q9HBL0 1735 aaKnown RBP25.12■■□□□ 1.61
CLN3-247ENST00000636351 DISP2A7MBM2 1401 aa25.12■■□□□ 1.61
CLN3-247ENST00000636351 EVA1CP58658 441 aa25.11■■□□□ 1.61
CLN3-247ENST00000636351 USP19O94966 1318 aa25.11■■□□□ 1.61
CLN3-247ENST00000636351 CABP2Q9NPB3 220 aa25.1■■□□□ 1.61
CLN3-247ENST00000636351 CAMTA1Q9Y6Y1 1673 aa25.09■■□□□ 1.61
CLN3-247ENST00000636351 CPDO75976 1380 aa25.08■■□□□ 1.61
CLN3-247ENST00000636351 TRIM37O94972 964 aa25.08■■□□□ 1.61
CLN3-247ENST00000636351 LARP1Q6PKG0 1096 aaKnown RBP25.08■■□□□ 1.61
CLN3-247ENST00000636351 FAM196AQ6ZSG2 479 aa25.08■■□□□ 1.61
CLN3-247ENST00000636351 LMO7Q8WWI1 1683 aa25.07■■□□□ 1.6
CLN3-247ENST00000636351 EZH2Q15910 746 aaKnown RBP25.07■■□□□ 1.6
CLN3-247ENST00000636351 BARGINQ6ZT62 677 aa25.07■■□□□ 1.6
CLN3-247ENST00000636351 USP47Q96K76 1375 aa25.06■■□□□ 1.6
CLN3-247ENST00000636351 R3HDM1Q15032 1099 aaKnown RBP25.06■■□□□ 1.6
CLN3-247ENST00000636351 NLRP13Q86W25 1043 aa25.06■■□□□ 1.6
CLN3-247ENST00000636351 GCP02774 474 aa25.04■■□□□ 1.6
CLN3-247ENST00000636351 PDE3BQ13370 1112 aa25.04■■□□□ 1.6
CLN3-247ENST00000636351 TCP11L2Q8N4U5 519 aa25.03■■□□□ 1.6
CLN3-247ENST00000636351 CAMKK2Q96RR4 588 aa25.03■■□□□ 1.6
CLN3-247ENST00000636351 EVC2Q86UK5 1308 aa25.03■■□□□ 1.6
CLN3-247ENST00000636351 ST20-MTHFSA0A0A6YYL1 179 aa25.01■■□□□ 1.59
CLN3-247ENST00000636351 APBA3O96018 575 aa25.01■■□□□ 1.59
CLN3-247ENST00000636351 CABP1Q9NZU7 370 aa25.01■■□□□ 1.59
CLN3-247ENST00000636351 BRD4O60885 1362 aaPredicted RBP25.01■■□□□ 1.59
CLN3-247ENST00000636351 SBNO2Q9Y2G9 1366 aa25.01■■□□□ 1.59
CLN3-247ENST00000636351 USP6P35125 1406 aa25.01■■□□□ 1.59
CLN3-247ENST00000636351 COL5A2P05997 1499 aaPredicted RBP25.01■■□□□ 1.59
CLN3-247ENST00000636351 ZBTB7CA1YPR0 619 aa25■■□□□ 1.59
CLN3-247ENST00000636351 PARD3Q8TEW0 1356 aa24.98■■□□□ 1.59
CLN3-247ENST00000636351 THRAP3Q9Y2W1 955 aaKnown RBP24.98■■□□□ 1.59
CLN3-247ENST00000636351 NLRP6P59044 892 aa24.97■■□□□ 1.59
CLN3-247ENST00000636351 SLIT3O75094 1523 aa24.96■■□□□ 1.59
CLN3-247ENST00000636351 CRB1P82279 1406 aa24.95■■□□□ 1.58
CLN3-247ENST00000636351 PARP4Q9UKK3 1724 aaKnown RBP24.93■■□□□ 1.58
CLN3-247ENST00000636351 PIK3C2AO00443 1686 aa24.93■■□□□ 1.58
CLN3-247ENST00000636351 AATKQ6ZMQ8 1374 aa24.93■■□□□ 1.58
CLN3-247ENST00000636351 RREB1Q92766 1687 aa24.92■■□□□ 1.58
CLN3-247ENST00000636351 EIF4G2P78344 907 aaKnown RBP eCLIP24.91■■□□□ 1.581e-9■■■■□ 22.4
CLN3-247ENST00000636351 TESK2Q96S53 571 aa24.91■■□□□ 1.58
CLN3-247ENST00000636351 SLC24A1O60721 1099 aa24.9■■□□□ 1.58
CLN3-247ENST00000636351 NUP188Q5SRE5 1749 aa24.89■■□□□ 1.58
CLN3-247ENST00000636351 TMF1P82094 1093 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms