RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PMFBP1Q8TBY8 1022 aa25.4■■□□□ 1.66
CLN3-239ENST00000628023 ARHGEF10O15013 1369 aa25.4■■□□□ 1.66
CLN3-239ENST00000628023 PLEKHG5O94827 1062 aa25.37■■□□□ 1.65
CLN3-239ENST00000628023 SLC24A1O60721 1099 aa25.36■■□□□ 1.65
CLN3-239ENST00000628023 CCDC61Q9Y6R9 512 aa25.36■■□□□ 1.65
CLN3-239ENST00000628023 EIF4G2P78344 907 aaKnown RBP eCLIP25.35■■□□□ 1.651e-9■■■■□ 22.4
CLN3-239ENST00000628023 NGDNQ8NEJ9 315 aaKnown RBP25.35■■□□□ 1.65
CLN3-239ENST00000628023 CABLES1Q8TDN4 633 aa25.35■■□□□ 1.65
CLN3-239ENST00000628023 SLIT2O94813 1529 aa25.34■■□□□ 1.65
CLN3-239ENST00000628023 TOPAZ1Q8N9V7 1692 aa25.34■■□□□ 1.65
CLN3-239ENST00000628023 TESK2Q96S53 571 aa25.34■■□□□ 1.65
CLN3-239ENST00000628023 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.34■■□□□ 1.65
CLN3-239ENST00000628023 PPIP5K1Q6PFW1 1433 aa25.33■■□□□ 1.65
CLN3-239ENST00000628023 CCDC125Q86Z20 511 aa25.32■■□□□ 1.64
CLN3-239ENST00000628023 TMF1P82094 1093 aa25.31■■□□□ 1.64
CLN3-239ENST00000628023 HSPA5P11021 654 aaKnown RBP25.29■■□□□ 1.64
CLN3-239ENST00000628023 CCDC9Q9Y3X0 531 aaKnown RBP25.29■■□□□ 1.64
CLN3-239ENST00000628023 VPS72Q15906 364 aa25.28■■□□□ 1.64
CLN3-239ENST00000628023 CABP1Q9NZU7 370 aa25.27■■□□□ 1.64
CLN3-239ENST00000628023 PLEKHG3A1L390 1219 aa25.26■■□□□ 1.63
CLN3-239ENST00000628023 ACEP12821 1306 aa25.26■■□□□ 1.63
CLN3-239ENST00000628023 PAK3O75914 559 aaPredicted RBP25.25■■□□□ 1.63
CLN3-239ENST00000628023 POLR3AO14802 1390 aaPredicted RBP25.24■■□□□ 1.63
CLN3-239ENST00000628023 FAM83GA6ND36 823 aa25.24■■□□□ 1.63
CLN3-239ENST00000628023 CDCA8Q53HL2 280 aa25.24■■□□□ 1.63
CLN3-239ENST00000628023 TMC1Q8TDI8 760 aa25.24■■□□□ 1.63
CLN3-239ENST00000628023 NWD2Q9ULI1 1742 aa25.23■■□□□ 1.63
CLN3-239ENST00000628023 GLI3P10071 1580 aa25.23■■□□□ 1.63
CLN3-239ENST00000628023 PUS7Q96PZ0 661 aaKnown RBP25.23■■□□□ 1.63
CLN3-239ENST00000628023 SEPT12Q8IYM1 358 aa25.22■■□□□ 1.63
CLN3-239ENST00000628023 ABCA3Q99758 1704 aa25.21■■□□□ 1.63
CLN3-239ENST00000628023 PLCH1Q4KWH8 1693 aa25.21■■□□□ 1.63
CLN3-239ENST00000628023 TRPM3Q9HCF6 1732 aaPredicted RBP25.2■■□□□ 1.63
CLN3-239ENST00000628023 ZRANB1Q9UGI0 708 aa25.2■■□□□ 1.62
CLN3-239ENST00000628023 ALS2Q96Q42 1657 aa25.18■■□□□ 1.62
CLN3-239ENST00000628023 ONECUT3O60422 494 aaPredicted RBP25.18■■□□□ 1.62
CLN3-239ENST00000628023 POLR3GLQ9BT43 218 aa25.18■■□□□ 1.62
CLN3-239ENST00000628023 BTG4Q9NY30 223 aa25.18■■□□□ 1.62
CLN3-239ENST00000628023 EP400Q96L91 3159 aa25.17■■□□□ 1.62
CLN3-239ENST00000628023 A0A0G2JS52 829 aa25.17■■□□□ 1.62
CLN3-239ENST00000628023 ZEB1P37275 1124 aaPredicted RBP25.17■■□□□ 1.62
CLN3-239ENST00000628023 MYT1Q01538 1121 aa25.17■■□□□ 1.62
CLN3-239ENST00000628023 SF3B2Q13435 895 aaKnown RBP25.17■■□□□ 1.62
CLN3-239ENST00000628023 NINLQ9Y2I6 1382 aa25.17■■□□□ 1.62
CLN3-239ENST00000628023 USP6P35125 1406 aa25.15■■□□□ 1.62
CLN3-239ENST00000628023 BLMP54132 1417 aaPredicted RBP25.15■■□□□ 1.62
CLN3-239ENST00000628023 KRT27Q7Z3Y8 459 aa25.15■■□□□ 1.62
CLN3-239ENST00000628023 HDGFL2Q7Z4V5 671 aaPredicted RBP25.15■■□□□ 1.62
CLN3-239ENST00000628023 SLC12A5Q9H2X9 1139 aa25.15■■□□□ 1.62
CLN3-239ENST00000628023 PRDM11Q9NQV5 511 aa25.14■■□□□ 1.62
CLN3-239ENST00000628023 COL14A1Q05707 1796 aaKnown RBP25.13■■□□□ 1.61
CLN3-239ENST00000628023 ZNF692Q9BU19 519 aaPredicted RBP25.13■■□□□ 1.61
CLN3-239ENST00000628023 TERF2IPQ9NYB0 399 aa25.13■■□□□ 1.61
CLN3-239ENST00000628023 KTN1Q86UP2 1357 aaKnown RBP25.13■■□□□ 1.61
CLN3-239ENST00000628023 AKAP12Q02952 1782 aa25.13■■□□□ 1.61
CLN3-239ENST00000628023 BRWD3Q6RI45 1802 aa25.12■■□□□ 1.61
CLN3-239ENST00000628023 BRD4O60885 1362 aaPredicted RBP25.11■■□□□ 1.61
CLN3-239ENST00000628023 CPSF1Q10570 1443 aaKnown RBP25.11■■□□□ 1.61
CLN3-239ENST00000628023 FAM98CQ17RN3 349 aaKnown RBP25.1■■□□□ 1.61
CLN3-239ENST00000628023 A0A1W2PP64 1363 aa25.09■■□□□ 1.61
CLN3-239ENST00000628023 ABTB2Q8N961 1025 aa25.09■■□□□ 1.61
CLN3-239ENST00000628023 CD163L1Q9NR16 1453 aa25.09■■□□□ 1.61
CLN3-239ENST00000628023 MON2Q7Z3U7 1717 aa25.07■■□□□ 1.6
CLN3-239ENST00000628023 NUTM2GQ5VZR2 741 aa25.07■■□□□ 1.6
CLN3-239ENST00000628023 NRAPQ86VF7 1730 aa25.06■■□□□ 1.6
CLN3-239ENST00000628023 SPATA31A5Q5VU36 1347 aa25.06■■□□□ 1.6
CLN3-239ENST00000628023 SPATA31A7Q8IWB4 1347 aa25.06■■□□□ 1.6
CLN3-239ENST00000628023 ANKRD36BQ8N2N9 1353 aa25.05■■□□□ 1.6
CLN3-239ENST00000628023 TTC21BQ7Z4L5 1316 aa25.05■■□□□ 1.6
CLN3-239ENST00000628023 KIAA0232Q92628 1395 aa25.05■■□□□ 1.6
CLN3-239ENST00000628023 NRKQ7Z2Y5 1582 aa25.04■■□□□ 1.6
CLN3-239ENST00000628023 TTC21AQ8NDW8 1320 aa25.04■■□□□ 1.6
CLN3-239ENST00000628023 MYOM1P52179 1685 aa25.04■■□□□ 1.6
CLN3-239ENST00000628023 EDC4Q6P2E9 1401 aaKnown RBP25.03■■□□□ 1.6
CLN3-239ENST00000628023 SSH2Q76I76 1423 aa25.03■■□□□ 1.6
CLN3-239ENST00000628023 CRYBG1Q9Y4K1 1723 aa25.03■■□□□ 1.6
CLN3-239ENST00000628023 ZC3H6P61129 1189 aaKnown RBP25.03■■□□□ 1.6
CLN3-239ENST00000628023 DEFB132Q7Z7B7 95 aa25.03■■□□□ 1.6
CLN3-239ENST00000628023 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.03■■□□□ 1.6
CLN3-239ENST00000628023 CHRNA2Q15822 529 aa25.02■■□□□ 1.6
CLN3-239ENST00000628023 C11orf95C9JLR9 678 aaPredicted RBP25.01■■□□□ 1.59
CLN3-239ENST00000628023 EVA1CP58658 441 aa25.01■■□□□ 1.59
CLN3-239ENST00000628023 NLRP13Q86W25 1043 aa25.01■■□□□ 1.59
CLN3-239ENST00000628023 STRN4Q9NRL3 753 aa25.01■■□□□ 1.59
CLN3-239ENST00000628023 BAG6P46379 1132 aa25■■□□□ 1.59
CLN3-239ENST00000628023 KIF7Q2M1P5 1343 aa25■■□□□ 1.59
CLN3-239ENST00000628023 PIK3C2AO00443 1686 aa24.99■■□□□ 1.59
CLN3-239ENST00000628023 NLRP6P59044 892 aa24.99■■□□□ 1.59
CLN3-239ENST00000628023 PHRF1Q9P1Y6 1649 aaKnown RBP24.97■■□□□ 1.59
CLN3-239ENST00000628023 SPATA31A1Q5TZJ5 1347 aa24.97■■□□□ 1.59
CLN3-239ENST00000628023 NME9Q86XW9 330 aa24.95■■□□□ 1.58
CLN3-239ENST00000628023 USP19O94966 1318 aa24.94■■□□□ 1.58
CLN3-239ENST00000628023 NSD3Q9BZ95 1437 aa24.94■■□□□ 1.58
CLN3-239ENST00000628023 CPDO75976 1380 aa24.93■■□□□ 1.58
CLN3-239ENST00000628023 CCDC7Q96M83 1385 aa24.93■■□□□ 1.58
CLN3-239ENST00000628023 SRCAPQ6ZRS2 3230 aa24.92■■□□□ 1.58
CLN3-239ENST00000628023 GCP02774 474 aa24.92■■□□□ 1.58
CLN3-239ENST00000628023 USP35Q9P2H5 1018 aa24.92■■□□□ 1.58
CLN3-239ENST00000628023 FAM182BQ5T319 152 aa24.91■■□□□ 1.58
CLN3-239ENST00000628023 SOX12O15370 315 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms