RNA–Protein interactions for RNA: ENST00000622166.1

IGHV3-54-201, Transcript of immunoglobulin heavy variable 3-54 (pseudogene), humanhuman

BASIC

Gene IGHV3-54, Length 353 nt, Biotype IG V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV3-54-201ENST00000622166 HDGFL2Q7Z4V5 671 aaPredicted RBP12.33□□□□□ -0.44
IGHV3-54-201ENST00000622166 PRAM1Q96QH2 718 aa12.33□□□□□ -0.44
IGHV3-54-201ENST00000622166 RWDD1Q9H446 243 aaPredicted RBP12.33□□□□□ -0.44
IGHV3-54-201ENST00000622166 PCDHB15Q9Y5E8 787 aa12.33□□□□□ -0.44
IGHV3-54-201ENST00000622166 ATP7BP35670 1465 aa12.33□□□□□ -0.44
IGHV3-54-201ENST00000622166 DIP2BQ9P265 1576 aa12.32□□□□□ -0.44
IGHV3-54-201ENST00000622166 MVPQ14764 893 aaKnown RBP12.32□□□□□ -0.44
IGHV3-54-201ENST00000622166 GGNBP2Q9H3C7 697 aa12.32□□□□□ -0.44
IGHV3-54-201ENST00000622166 POGKQ9P215 609 aa12.32□□□□□ -0.44
IGHV3-54-201ENST00000622166 DAXXQ9UER7 740 aaPredicted RBP12.32□□□□□ -0.44
IGHV3-54-201ENST00000622166 TRIM35Q9UPQ4 493 aa12.32□□□□□ -0.44
IGHV3-54-201ENST00000622166 TNNQ9UQP3 1299 aa12.32□□□□□ -0.44
IGHV3-54-201ENST00000622166 MINK1Q8N4C8 1332 aaPredicted RBP12.32□□□□□ -0.44
IGHV3-54-201ENST00000622166 RIMBP3CA6NJZ7 1639 aa12.31□□□□□ -0.44
IGHV3-54-201ENST00000622166 RIMBP3BA6NNM3 1639 aa12.31□□□□□ -0.44
IGHV3-54-201ENST00000622166 RIMBP3Q9UFD9 1639 aa12.31□□□□□ -0.44
IGHV3-54-201ENST00000622166 SAFB2Q14151 953 aaKnown RBP eCLIP12.31□□□□□ -0.44
IGHV3-54-201ENST00000622166 CDK19Q9BWU1 502 aa12.31□□□□□ -0.44
IGHV3-54-201ENST00000622166 A2ML1A8K2U0 1454 aa12.31□□□□□ -0.44
IGHV3-54-201ENST00000622166 DIAPH1O60610 1272 aaKnown RBP12.3□□□□□ -0.44
IGHV3-54-201ENST00000622166 FBXO31Q5XUX0 539 aaPredicted RBP12.3□□□□□ -0.44
IGHV3-54-201ENST00000622166 DZIP1LQ8IYY4 767 aaKnown RBP12.3□□□□□ -0.44
IGHV3-54-201ENST00000622166 PDZRN3Q9UPQ7 1066 aa12.3□□□□□ -0.44
IGHV3-54-201ENST00000622166 EXOSC9Q06265 439 aaKnown RBP12.29□□□□□ -0.44
IGHV3-54-201ENST00000622166 NFKBIBQ15653 356 aa12.29□□□□□ -0.44
IGHV3-54-201ENST00000622166 RIMS2Q9UQ26 1411 aa12.28□□□□□ -0.44
IGHV3-54-201ENST00000622166 KNDC1Q76NI1 1749 aa12.28□□□□□ -0.44
IGHV3-54-201ENST00000622166 U2SURPO15042 1029 aaKnown RBP12.28□□□□□ -0.44
IGHV3-54-201ENST00000622166 FCHSD2O94868 740 aa12.28□□□□□ -0.44
IGHV3-54-201ENST00000622166 FAM135BQ49AJ0 1406 aa12.28□□□□□ -0.44
IGHV3-54-201ENST00000622166 PPIP5K1Q6PFW1 1433 aa12.28□□□□□ -0.44
IGHV3-54-201ENST00000622166 SLC4A3P48751 1232 aa12.27□□□□□ -0.45
IGHV3-54-201ENST00000622166 HDAC1Q13547 482 aaPredicted RBP12.27□□□□□ -0.45
IGHV3-54-201ENST00000622166 BCL2L13Q9BXK5 485 aa12.27□□□□□ -0.45
IGHV3-54-201ENST00000622166 LRRC7Q96NW7 1537 aa12.27□□□□□ -0.45
IGHV3-54-201ENST00000622166 NRXN3Q9Y4C0 1643 aa12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 BRPF1P55201 1214 aaPredicted RBP12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 RIPK4P57078 832 aa12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 ALDH1L2Q3SY69 923 aa12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 SSH1Q8WYL5 1049 aa12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 TSR2Q969E8 191 aaKnown RBP12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 ZNF428Q96B54 188 aa12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 SIRT1Q96EB6 747 aa12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 SMC4Q9NTJ3 1288 aa12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 CABP1Q9NZU7 370 aa12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 DDX19BQ9UMR2 479 aa12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 CPSF1Q10570 1443 aaKnown RBP12.26□□□□□ -0.45
IGHV3-54-201ENST00000622166 MAP2P11137 1827 aaKnown RBP12.25□□□□□ -0.45
IGHV3-54-201ENST00000622166 SEC24BO95487 1268 aa12.25□□□□□ -0.45
IGHV3-54-201ENST00000622166 ATF7IPQ6VMQ6 1270 aa12.25□□□□□ -0.45
IGHV3-54-201ENST00000622166 FTSJ3Q8IY81 847 aaKnown RBP12.25□□□□□ -0.45
IGHV3-54-201ENST00000622166 IPO8O15397 1037 aaKnown RBP12.24□□□□□ -0.45
IGHV3-54-201ENST00000622166 TRIM27P14373 513 aa12.24□□□□□ -0.45
IGHV3-54-201ENST00000622166 BECN1Q14457 450 aa12.24□□□□□ -0.45
IGHV3-54-201ENST00000622166 EDC4Q6P2E9 1401 aaKnown RBP12.24□□□□□ -0.45
IGHV3-54-201ENST00000622166 MON2Q7Z3U7 1717 aa12.24□□□□□ -0.45
IGHV3-54-201ENST00000622166 KIF16BQ96L93 1317 aa12.24□□□□□ -0.45
IGHV3-54-201ENST00000622166 RSPH6AQ9H0K4 717 aa12.24□□□□□ -0.45
IGHV3-54-201ENST00000622166 STAG3Q9UJ98 1225 aa12.24□□□□□ -0.45
IGHV3-54-201ENST00000622166 AKAP12Q02952 1782 aa12.23□□□□□ -0.45
IGHV3-54-201ENST00000622166 CDK12Q9NYV4 1490 aaPredicted RBP12.23□□□□□ -0.45
IGHV3-54-201ENST00000622166 TECPR2O15040 1411 aa12.23□□□□□ -0.45
IGHV3-54-201ENST00000622166 AATKQ6ZMQ8 1374 aa12.23□□□□□ -0.45
IGHV3-54-201ENST00000622166 FAM69CQ0P6D2 419 aa12.23□□□□□ -0.45
IGHV3-54-201ENST00000622166 SMC5Q8IY18 1101 aa12.23□□□□□ -0.45
IGHV3-54-201ENST00000622166 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.23□□□□□ -0.45
IGHV3-54-201ENST00000622166 TBC1D32Q96NH3 1257 aa12.23□□□□□ -0.45
IGHV3-54-201ENST00000622166 POLKQ9UBT6 870 aa12.23□□□□□ -0.45
IGHV3-54-201ENST00000622166 TSPOAP1O95153 1857 aa12.23□□□□□ -0.45
IGHV3-54-201ENST00000622166 NFE2L2Q16236 605 aa12.22□□□□□ -0.45
IGHV3-54-201ENST00000622166 NOB1Q9ULX3 412 aaKnown RBP12.22□□□□□ -0.45
IGHV3-54-201ENST00000622166 CPS1P31327 1500 aa12.21□□□□□ -0.45
IGHV3-54-201ENST00000622166 CALD1Q05682 793 aaKnown RBP12.21□□□□□ -0.45
IGHV3-54-201ENST00000622166 GSE1Q14687 1217 aa12.21□□□□□ -0.45
IGHV3-54-201ENST00000622166 UPF2Q9HAU5 1272 aaKnown RBP12.21□□□□□ -0.45
IGHV3-54-201ENST00000622166 ZBTB40Q9NUA8 1239 aa12.21□□□□□ -0.45
IGHV3-54-201ENST00000622166 ITSN1Q15811 1721 aa12.2□□□□□ -0.46
IGHV3-54-201ENST00000622166 PIK3R4Q99570 1358 aa12.2□□□□□ -0.46
IGHV3-54-201ENST00000622166 C3P01024 1663 aa12.2□□□□□ -0.46
IGHV3-54-201ENST00000622166 WASLO00401 505 aaPredicted RBP12.2□□□□□ -0.46
IGHV3-54-201ENST00000622166 PRKAR2BP31323 418 aa12.2□□□□□ -0.46
IGHV3-54-201ENST00000622166 CYB5RLQ6IPT4 315 aa12.2□□□□□ -0.46
IGHV3-54-201ENST00000622166 WAPLQ7Z5K2 1190 aa12.2□□□□□ -0.46
IGHV3-54-201ENST00000622166 TMEM57Q8N5G2 664 aa12.2□□□□□ -0.46
IGHV3-54-201ENST00000622166 ZNF853P0CG23 659 aa12.19□□□□□ -0.46
IGHV3-54-201ENST00000622166 IL13P35225 146 aa12.19□□□□□ -0.46
IGHV3-54-201ENST00000622166 ITPRIPQ8IWB1 547 aa12.19□□□□□ -0.46
IGHV3-54-201ENST00000622166 ARHGAP45Q92619 1136 aa12.19□□□□□ -0.46
IGHV3-54-201ENST00000622166 PTCH1Q13635 1447 aa12.19□□□□□ -0.46
IGHV3-54-201ENST00000622166 NRKQ7Z2Y5 1582 aa12.18□□□□□ -0.46
IGHV3-54-201ENST00000622166 DLG5Q8TDM6 1919 aa12.18□□□□□ -0.46
IGHV3-54-201ENST00000622166 GNAI1P63096 354 aa12.18□□□□□ -0.46
IGHV3-54-201ENST00000622166 CHMP4BQ9H444 224 aaKnown RBP12.18□□□□□ -0.46
IGHV3-54-201ENST00000622166 IFT57Q9NWB7 429 aa12.18□□□□□ -0.46
IGHV3-54-201ENST00000622166 FRAT2O75474 233 aaPredicted RBP12.17□□□□□ -0.46
IGHV3-54-201ENST00000622166 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.17□□□□□ -0.46
IGHV3-54-201ENST00000622166 MRPL50Q8N5N7 158 aaKnown RBP12.17□□□□□ -0.46
IGHV3-54-201ENST00000622166 SENP3Q9H4L4 574 aaPredicted RBP12.17□□□□□ -0.46
IGHV3-54-201ENST00000622166 ANTXR1Q9H6X2 564 aa12.17□□□□□ -0.46
IGHV3-54-201ENST00000622166 METP08581 1390 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms