RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 LRPPRCP42704 1394 aaKnown RBP13.75□□□□□ -0.21
VPS11-208ENST00000621676 ANKRD36BQ8N2N9 1353 aa13.75□□□□□ -0.21
VPS11-208ENST00000621676 ADGRB1O14514 1584 aa13.74□□□□□ -0.21
VPS11-208ENST00000621676 PTPRUQ92729 1446 aa13.74□□□□□ -0.21
VPS11-208ENST00000621676 ASXL1Q8IXJ9 1541 aa13.74□□□□□ -0.21
VPS11-208ENST00000621676 RGS3P49796 1198 aa13.74□□□□□ -0.21
VPS11-208ENST00000621676 ATAD2Q6PL18 1390 aa13.73□□□□□ -0.21
VPS11-208ENST00000621676 LRRC59Q96AG4 307 aaKnown RBP13.73□□□□□ -0.21
VPS11-208ENST00000621676 RUNDC1Q96C34 613 aa13.73□□□□□ -0.21
VPS11-208ENST00000621676 TTC21BQ7Z4L5 1316 aa13.73□□□□□ -0.21
VPS11-208ENST00000621676 RRP1P56182 461 aaKnown RBP13.73□□□□□ -0.21
VPS11-208ENST00000621676 TBX22Q9Y458 520 aa13.73□□□□□ -0.21
VPS11-208ENST00000621676 SETD1BQ9UPS6 1966 aaKnown RBP13.73□□□□□ -0.21
VPS11-208ENST00000621676 ARHGEF40Q8TER5 1519 aa13.72□□□□□ -0.21
VPS11-208ENST00000621676 TULP4Q9NRJ4 1543 aa13.72□□□□□ -0.21
VPS11-208ENST00000621676 DUSP27Q5VZP5 1158 aa13.72□□□□□ -0.21
VPS11-208ENST00000621676 PHF8Q9UPP1 1060 aa13.72□□□□□ -0.21
VPS11-208ENST00000621676 TMEM131LA2VDJ0 1609 aa13.72□□□□□ -0.21
VPS11-208ENST00000621676 EXOSC9Q06265 439 aaKnown RBP13.72□□□□□ -0.21
VPS11-208ENST00000621676 KDM4FA0A1W2PPD8 638 aa13.71□□□□□ -0.21
VPS11-208ENST00000621676 ABCC11Q96J66 1382 aa13.71□□□□□ -0.21
VPS11-208ENST00000621676 ADAMTS13Q76LX8 1427 aa13.7□□□□□ -0.22
VPS11-208ENST00000621676 ZMYM4Q5VZL5 1548 aa13.7□□□□□ -0.22
VPS11-208ENST00000621676 ATF3P18847 181 aa13.7□□□□□ -0.22
VPS11-208ENST00000621676 TMPOP42166 694 aaKnown RBP13.7□□□□□ -0.22
VPS11-208ENST00000621676 ZNF335Q9H4Z2 1342 aaPredicted RBP13.7□□□□□ -0.22
VPS11-208ENST00000621676 PIP4K2BP78356 416 aa13.69□□□□□ -0.22
VPS11-208ENST00000621676 TSHZ2Q9NRE2 1034 aa13.69□□□□□ -0.22
VPS11-208ENST00000621676 PPP4R2Q9NY27 417 aa13.69□□□□□ -0.22
VPS11-208ENST00000621676 ZFYVE9O95405 1425 aa13.68□□□□□ -0.22
VPS11-208ENST00000621676 CSB-PGBD3P0DP91 1061 aa13.68□□□□□ -0.22
VPS11-208ENST00000621676 MAP3K19Q56UN5 1328 aa13.67□□□□□ -0.22
VPS11-208ENST00000621676 SLFN5Q08AF3 891 aa13.67□□□□□ -0.22
VPS11-208ENST00000621676 EIF4A2Q14240 407 aaKnown RBP13.67□□□□□ -0.22
VPS11-208ENST00000621676 APBB1O00213 710 aa13.67□□□□□ -0.22
VPS11-208ENST00000621676 SMC4Q9NTJ3 1288 aa13.67□□□□□ -0.22
VPS11-208ENST00000621676 NRXN1Q9ULB1 1477 aa13.66□□□□□ -0.22
VPS11-208ENST00000621676 TSPYL6Q8N831 410 aa13.66□□□□□ -0.22
VPS11-208ENST00000621676 PPLO60437 1756 aa13.66□□□□□ -0.22
VPS11-208ENST00000621676 AGLP35573 1532 aa13.65□□□□□ -0.22
VPS11-208ENST00000621676 SBNO2Q9Y2G9 1366 aa13.65□□□□□ -0.22
VPS11-208ENST00000621676 ZNF692Q9BU19 519 aaPredicted RBP13.64□□□□□ -0.23
VPS11-208ENST00000621676 STRN4Q9NRL3 753 aa13.64□□□□□ -0.23
VPS11-208ENST00000621676 QRICH2Q9H0J4 1663 aa13.64□□□□□ -0.23
VPS11-208ENST00000621676 KRT28Q7Z3Y7 464 aa13.64□□□□□ -0.23
VPS11-208ENST00000621676 C1orf115Q9H7X2 142 aa13.64□□□□□ -0.23
VPS11-208ENST00000621676 NLRP2Q9NX02 1062 aa13.64□□□□□ -0.23
VPS11-208ENST00000621676 PLEKHG1Q9ULL1 1385 aa13.63□□□□□ -0.23
VPS11-208ENST00000621676 IQGAP1P46940 1657 aa13.63□□□□□ -0.23
VPS11-208ENST00000621676 KDM5AP29375 1690 aaKnown RBP13.62□□□□□ -0.23
VPS11-208ENST00000621676 RLBP1P12271 317 aa13.62□□□□□ -0.23
VPS11-208ENST00000621676 FTSJ3Q8IY81 847 aaKnown RBP13.62□□□□□ -0.23
VPS11-208ENST00000621676 NGEFQ8N5V2 710 aa13.62□□□□□ -0.23
VPS11-208ENST00000621676 TRIM35Q9UPQ4 493 aa13.62□□□□□ -0.23
VPS11-208ENST00000621676 RIMS1Q86UR5 1692 aaKnown RBP13.62□□□□□ -0.23
VPS11-208ENST00000621676 EIF2S2P20042 333 aaKnown RBP13.62□□□□□ -0.23
VPS11-208ENST00000621676 ARXQ96QS3 562 aa13.62□□□□□ -0.23
VPS11-208ENST00000621676 EYA1Q99502 592 aa13.62□□□□□ -0.23
VPS11-208ENST00000621676 E9PSI1 815 aa13.61□□□□□ -0.23
VPS11-208ENST00000621676 ITPRIPQ8IWB1 547 aa13.61□□□□□ -0.23
VPS11-208ENST00000621676 SPATA31D1Q6ZQQ2 1576 aa13.61□□□□□ -0.23
VPS11-208ENST00000621676 KAT6BQ8WYB5 2073 aa13.61□□□□□ -0.23
VPS11-208ENST00000621676 ANXA1P04083 346 aa13.61□□□□□ -0.23
VPS11-208ENST00000621676 SLC4A10Q6U841 1118 aa13.61□□□□□ -0.23
VPS11-208ENST00000621676 NUTM2BA6NNL0 878 aaPredicted RBP13.6□□□□□ -0.23
VPS11-208ENST00000621676 NUTM2EB1AL46 878 aaPredicted RBP13.6□□□□□ -0.23
VPS11-208ENST00000621676 IL13P35225 146 aa13.6□□□□□ -0.23
VPS11-208ENST00000621676 NUTM2AQ8IVF1 878 aaPredicted RBP13.6□□□□□ -0.23
VPS11-208ENST00000621676 SMG6Q86US8 1419 aaKnown RBP13.6□□□□□ -0.23
VPS11-208ENST00000621676 CPS1P31327 1500 aa13.6□□□□□ -0.23
VPS11-208ENST00000621676 PIP4K2AP48426 406 aaPredicted RBP13.6□□□□□ -0.23
VPS11-208ENST00000621676 MPRIPQ6WCQ1 1025 aa13.59□□□□□ -0.23
VPS11-208ENST00000621676 TMEM94Q12767 1356 aa13.59□□□□□ -0.23
VPS11-208ENST00000621676 NLRP1Q9C000 1473 aa13.59□□□□□ -0.23
VPS11-208ENST00000621676 RTF1Q92541 710 aaKnown RBP13.59□□□□□ -0.23
VPS11-208ENST00000621676 AXIN2Q9Y2T1 843 aa13.59□□□□□ -0.23
VPS11-208ENST00000621676 SSH1Q8WYL5 1049 aa13.59□□□□□ -0.23
VPS11-208ENST00000621676 RSPH6AQ9H0K4 717 aa13.59□□□□□ -0.23
VPS11-208ENST00000621676 CD163L1Q9NR16 1453 aa13.58□□□□□ -0.23
VPS11-208ENST00000621676 RBM19Q9Y4C8 960 aaKnown RBP13.58□□□□□ -0.24
VPS11-208ENST00000621676 FANCIQ9NVI1 1328 aa13.58□□□□□ -0.24
VPS11-208ENST00000621676 PDE3BQ13370 1112 aa13.58□□□□□ -0.24
VPS11-208ENST00000621676 MTHFSDQ2M296 383 aaKnown RBP13.58□□□□□ -0.24
VPS11-208ENST00000621676 ZNF330Q9Y3S2 320 aaPredicted RBP13.58□□□□□ -0.24
VPS11-208ENST00000621676 GCP02774 474 aa13.57□□□□□ -0.24
VPS11-208ENST00000621676 NOB1Q9ULX3 412 aaKnown RBP13.57□□□□□ -0.24
VPS11-208ENST00000621676 UTRNP46939 3433 aa13.57□□□□□ -0.24
VPS11-208ENST00000621676 ADAMTS2O95450 1211 aa13.57□□□□□ -0.24
VPS11-208ENST00000621676 C8orf58Q8NAV2 365 aa13.57□□□□□ -0.24
VPS11-208ENST00000621676 NBPF6Q5VWK0 638 aa13.57□□□□□ -0.24
VPS11-208ENST00000621676 NBPF4Q96M43 638 aa13.57□□□□□ -0.24
VPS11-208ENST00000621676 PLEKHF1Q96S99 279 aa13.57□□□□□ -0.24
VPS11-208ENST00000621676 C19orf44Q9H6X5 657 aa13.56□□□□□ -0.24
VPS11-208ENST00000621676 POLR3AO14802 1390 aaPredicted RBP13.56□□□□□ -0.24
VPS11-208ENST00000621676 PLEKHG3A1L390 1219 aa13.56□□□□□ -0.24
VPS11-208ENST00000621676 RARSP54136 660 aaKnown RBP13.55□□□□□ -0.24
VPS11-208ENST00000621676 FCHSD2O94868 740 aa13.55□□□□□ -0.24
VPS11-208ENST00000621676 MYT1Q01538 1121 aa13.55□□□□□ -0.24
VPS11-208ENST00000621676 MBIPQ9NS73 344 aa13.55□□□□□ -0.24
VPS11-208ENST00000621676 MYH16Q9H6N6 1097 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms