RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 U2SURPO15042 1029 aaKnown RBP27.83■■■□□ 2.05
LIME1-210ENST00000621325 PHF23Q9BUL5 403 aaPredicted RBP27.83■■■□□ 2.05
LIME1-210ENST00000621325 CPSF1Q10570 1443 aaKnown RBP27.83■■■□□ 2.05
LIME1-210ENST00000621325 PRR36Q9H6K5 1346 aa27.81■■■□□ 2.04
LIME1-210ENST00000621325 EID1Q9Y6B2 187 aa27.8■■■□□ 2.04
LIME1-210ENST00000621325 CCDC61Q9Y6R9 512 aa27.8■■■□□ 2.04
LIME1-210ENST00000621325 BCAR3O75815 825 aa27.79■■■□□ 2.04
LIME1-210ENST00000621325 NME9Q86XW9 330 aa27.79■■■□□ 2.04
LIME1-210ENST00000621325 ZRANB1Q9UGI0 708 aa27.79■■■□□ 2.04
LIME1-210ENST00000621325 PTPRUQ92729 1446 aa27.78■■■□□ 2.04
LIME1-210ENST00000621325 EDC4Q6P2E9 1401 aaKnown RBP27.77■■■□□ 2.04
LIME1-210ENST00000621325 PLEKHF1Q96S99 279 aa27.77■■■□□ 2.04
LIME1-210ENST00000621325 PNPLA6Q8IY17 1366 aa27.77■■■□□ 2.04
LIME1-210ENST00000621325 ARHGAP23Q9P227 1491 aa27.76■■■□□ 2.04
LIME1-210ENST00000621325 SLIT1O75093 1534 aa27.76■■■□□ 2.03
LIME1-210ENST00000621325 PPM1GO15355 546 aaPredicted RBP27.76■■■□□ 2.03
LIME1-210ENST00000621325 POLKQ9UBT6 870 aa27.76■■■□□ 2.03
LIME1-210ENST00000621325 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.75■■■□□ 2.03
LIME1-210ENST00000621325 DIAPH1O60610 1272 aaKnown RBP27.75■■■□□ 2.03
LIME1-210ENST00000621325 CDC42BPGQ6DT37 1551 aa27.75■■■□□ 2.03
LIME1-210ENST00000621325 CCDC27Q2M243 656 aa27.75■■■□□ 2.03
LIME1-210ENST00000621325 NUTM2FA1L443 756 aa27.74■■■□□ 2.03
LIME1-210ENST00000621325 MSH5O43196 834 aa27.73■■■□□ 2.03
LIME1-210ENST00000621325 WDR63Q8IWG1 891 aa27.73■■■□□ 2.03
LIME1-210ENST00000621325 ADGRB2O60241 1585 aa27.73■■■□□ 2.03
LIME1-210ENST00000621325 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.72■■■□□ 2.03
LIME1-210ENST00000621325 THEMISQ8N1K5 641 aaPredicted RBP27.71■■■□□ 2.03
LIME1-210ENST00000621325 AMOTL2Q9Y2J4 779 aa27.71■■■□□ 2.03
LIME1-210ENST00000621325 EMILIN1Q9Y6C2 1016 aa27.7■■■□□ 2.02
LIME1-210ENST00000621325 TMPOP42166 694 aaKnown RBP27.68■■■□□ 2.02
LIME1-210ENST00000621325 TBX22Q9Y458 520 aa27.68■■■□□ 2.02
LIME1-210ENST00000621325 MON2Q7Z3U7 1717 aa27.67■■■□□ 2.02
LIME1-210ENST00000621325 NCBP3Q53F19 620 aaKnown RBP27.67■■■□□ 2.02
LIME1-210ENST00000621325 MAPK8IP3Q9UPT6 1336 aa27.66■■■□□ 2.02
LIME1-210ENST00000621325 MAP2P11137 1827 aaKnown RBP27.66■■■□□ 2.02
LIME1-210ENST00000621325 TRIM35Q9UPQ4 493 aa27.65■■■□□ 2.02
LIME1-210ENST00000621325 AKAP12Q02952 1782 aa27.65■■■□□ 2.02
LIME1-210ENST00000621325 COG3Q96JB2 828 aa27.64■■■□□ 2.02
LIME1-210ENST00000621325 ZNF692Q9BU19 519 aaPredicted RBP27.64■■■□□ 2.02
LIME1-210ENST00000621325 ACEP12821 1306 aa27.63■■■□□ 2.01
LIME1-210ENST00000621325 ITSN1Q15811 1721 aa27.63■■■□□ 2.01
LIME1-210ENST00000621325 RRS1Q15050 365 aaKnown RBP27.62■■■□□ 2.01
LIME1-210ENST00000621325 RARSP54136 660 aaKnown RBP27.61■■■□□ 2.01
LIME1-210ENST00000621325 SKAP1Q86WV1 359 aa27.6■■■□□ 2.01
LIME1-210ENST00000621325 TSR2Q969E8 191 aaKnown RBP27.6■■■□□ 2.01
LIME1-210ENST00000621325 MYH16Q9H6N6 1097 aa27.6■■■□□ 2.01
LIME1-210ENST00000621325 PLEKHG3A1L390 1219 aa27.59■■■□□ 2.01
LIME1-210ENST00000621325 FCHSD2O94868 740 aa27.59■■■□□ 2.01
LIME1-210ENST00000621325 RIPK4P57078 832 aa27.59■■■□□ 2.01
LIME1-210ENST00000621325 RSPH6AQ9H0K4 717 aa27.59■■■□□ 2.01
LIME1-210ENST00000621325 AATKQ6ZMQ8 1374 aa27.59■■■□□ 2.01
LIME1-210ENST00000621325 LRRC7Q96NW7 1537 aa27.59■■■□□ 2.01
LIME1-210ENST00000621325 PRKAR2BP31323 418 aa27.59■■■□□ 2.01
LIME1-210ENST00000621325 TOPAZ1Q8N9V7 1692 aa27.58■■■□□ 2.01
LIME1-210ENST00000621325 HMOX1P09601 288 aa27.58■■■□□ 2.01
LIME1-210ENST00000621325 TTC21BQ7Z4L5 1316 aa27.58■■■□□ 2.01
LIME1-210ENST00000621325 BCL2L13Q9BXK5 485 aa27.58■■■□□ 2.01
LIME1-210ENST00000621325 PTCH1Q13635 1447 aa27.57■■■□□ 2
LIME1-210ENST00000621325 IL13P35225 146 aa27.57■■■□□ 2
LIME1-210ENST00000621325 RIMS1Q86UR5 1692 aaKnown RBP27.57■■■□□ 2
LIME1-210ENST00000621325 CEP170BQ9Y4F5 1589 aaPredicted RBP27.57■■■□□ 2
LIME1-210ENST00000621325 FRAT1Q92837 279 aaPredicted RBP27.57■■■□□ 2
LIME1-210ENST00000621325 KDM2BQ8NHM5 1336 aa27.56■■■□□ 2
LIME1-210ENST00000621325 FANCIQ9NVI1 1328 aa27.56■■■□□ 2
LIME1-210ENST00000621325 CDK12Q9NYV4 1490 aaPredicted RBP27.56■■■□□ 2
LIME1-210ENST00000621325 CANXP27824 592 aaKnown RBP27.55■■■□□ 2
LIME1-210ENST00000621325 PANK1Q8TE04 598 aa27.55■■■□□ 2
LIME1-210ENST00000621325 PNNQ9H307 717 aaKnown RBP27.55■■■□□ 2
LIME1-210ENST00000621325 PMFBP1Q8TBY8 1022 aa27.54■■■□□ 2
LIME1-210ENST00000621325 PHACTR3Q96KR7 559 aa27.54■■■□□ 2
LIME1-210ENST00000621325 KCNA6P17658 529 aa27.53■■■□□ 2
LIME1-210ENST00000621325 USP6P35125 1406 aa27.53■■■□□ 2
LIME1-210ENST00000621325 PDE3AQ14432 1141 aa27.53■■■□□ 2
LIME1-210ENST00000621325 DIP2AQ14689 1571 aa27.53■■■□□ 2
LIME1-210ENST00000621325 NRKQ7Z2Y5 1582 aa27.53■■■□□ 2
LIME1-210ENST00000621325 TNNQ9UQP3 1299 aa27.51■■■□□ 2
LIME1-210ENST00000621325 COG6Q9Y2V7 657 aa27.51■■□□□ 1.99
LIME1-210ENST00000621325 TCERG1O14776 1098 aaKnown RBP27.5■■□□□ 1.99
LIME1-210ENST00000621325 EXOSC9Q06265 439 aaKnown RBP27.5■■□□□ 1.99
LIME1-210ENST00000621325 XRN1Q8IZH2 1706 aaKnown RBP27.49■■□□□ 1.99
LIME1-210ENST00000621325 OVOS2A0A0J9YW53 1432 aa27.48■■□□□ 1.99
LIME1-210ENST00000621325 OVOS2Q6IE36 1432 aa27.48■■□□□ 1.99
LIME1-210ENST00000621325 DEKP35659 375 aaKnown RBP27.48■■□□□ 1.99
LIME1-210ENST00000621325 CENPQQ7L2Z9 268 aaPredicted RBP27.47■■□□□ 1.99
LIME1-210ENST00000621325 IL16Q14005 1332 aa27.47■■□□□ 1.99
LIME1-210ENST00000621325 RLBP1P12271 317 aa27.47■■□□□ 1.99
LIME1-210ENST00000621325 SSH2Q76I76 1423 aa27.46■■□□□ 1.99
LIME1-210ENST00000621325 RGPD8O14715 1765 aaPredicted RBP27.45■■□□□ 1.99
LIME1-210ENST00000621325 NEFMP07197 916 aa27.45■■□□□ 1.98
LIME1-210ENST00000621325 SOX12O15370 315 aa27.45■■□□□ 1.98
LIME1-210ENST00000621325 NFE2L2Q16236 605 aa27.45■■□□□ 1.98
LIME1-210ENST00000621325 NGDNQ8NEJ9 315 aaKnown RBP27.43■■□□□ 1.98
LIME1-210ENST00000621325 THUMPD2Q9BTF0 503 aaKnown RBP27.43■■□□□ 1.98
LIME1-210ENST00000621325 ANKLE2Q86XL3 938 aa27.42■■□□□ 1.98
LIME1-210ENST00000621325 CLUAP1Q96AJ1 413 aa27.42■■□□□ 1.98
LIME1-210ENST00000621325 PIK3R4Q99570 1358 aa27.4■■□□□ 1.98
LIME1-210ENST00000621325 CT47B1P0C2W7 299 aaPredicted RBP27.4■■□□□ 1.98
LIME1-210ENST00000621325 EIF4A2Q14240 407 aaKnown RBP27.4■■□□□ 1.98
LIME1-210ENST00000621325 ADAMTSL3P82987 1691 aa27.4■■□□□ 1.98
LIME1-210ENST00000621325 MS4A1P11836 297 aa27.39■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 648.6 ms