RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 DUSP27Q5VZP5 1158 aa12.99□□□□□ -0.33
VPS11-207ENST00000620429 MROH1Q8NDA8 1641 aa12.99□□□□□ -0.33
VPS11-207ENST00000620429 WDR43Q15061 677 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS11-207ENST00000620429 SASS6Q6UVJ0 657 aa12.98□□□□□ -0.33
VPS11-207ENST00000620429 NOL7Q9UMY1 257 aaKnown RBP12.98□□□□□ -0.33
VPS11-207ENST00000620429 VWDEQ8N2E2 1590 aa12.98□□□□□ -0.33
VPS11-207ENST00000620429 TMF1P82094 1093 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 MLECQ14165 292 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 PLEKHH1Q9ULM0 1364 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 SPHKAPQ2M3C7 1700 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 SEC24BO95487 1268 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 SLC20A2Q08357 652 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 TET3O43151 1660 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 CAMSAP1Q5T5Y3 1602 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 GOLGA2Q08379 1002 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 GGT6Q6P531 493 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 ARID3AQ99856 593 aa12.97□□□□□ -0.33
VPS11-207ENST00000620429 EIF2AK4Q9P2K8 1649 aaKnown RBP12.96□□□□□ -0.33
VPS11-207ENST00000620429 SKOR2Q2VWA4 1001 aaPredicted RBP12.96□□□□□ -0.33
VPS11-207ENST00000620429 TBC1D32Q96NH3 1257 aa12.96□□□□□ -0.33
VPS11-207ENST00000620429 CEP170BQ9Y4F5 1589 aaPredicted RBP12.96□□□□□ -0.34
VPS11-207ENST00000620429 CDK11BP21127 795 aaKnown RBP12.96□□□□□ -0.34
VPS11-207ENST00000620429 CLTCQ00610 1675 aaKnown RBP12.95□□□□□ -0.34
VPS11-207ENST00000620429 PTMSP20962 102 aa12.95□□□□□ -0.34
VPS11-207ENST00000620429 LAMC1P11047 1609 aa12.94□□□□□ -0.34
VPS11-207ENST00000620429 IBTKQ9P2D0 1353 aaPredicted RBP12.94□□□□□ -0.34
VPS11-207ENST00000620429 NASPP49321 788 aaPredicted RBP12.94□□□□□ -0.34
VPS11-207ENST00000620429 MAPK8IP3Q9UPT6 1336 aa12.94□□□□□ -0.34
VPS11-207ENST00000620429 PPP2R1AP30153 589 aa12.94□□□□□ -0.34
VPS11-207ENST00000620429 MCM5P33992 734 aa12.94□□□□□ -0.34
VPS11-207ENST00000620429 RNF17Q9BXT8 1623 aaKnown RBP12.94□□□□□ -0.34
VPS11-207ENST00000620429 ADGRF5Q8IZF2 1346 aa12.94□□□□□ -0.34
VPS11-207ENST00000620429 CEP152O94986 1710 aa12.93□□□□□ -0.34
VPS11-207ENST00000620429 ZMYM3Q14202 1370 aa12.93□□□□□ -0.34
VPS11-207ENST00000620429 CFAP70Q5T0N1 1121 aa12.93□□□□□ -0.34
VPS11-207ENST00000620429 KNSTRNQ9Y448 316 aa12.93□□□□□ -0.34
VPS11-207ENST00000620429 CPS1P31327 1500 aa12.93□□□□□ -0.34
VPS11-207ENST00000620429 CHGAP10645 457 aaKnown RBP12.93□□□□□ -0.34
VPS11-207ENST00000620429 UPF2Q9HAU5 1272 aaKnown RBP12.93□□□□□ -0.34
VPS11-207ENST00000620429 SOCS7O14512 581 aa12.92□□□□□ -0.34
VPS11-207ENST00000620429 DNTTIP2Q5QJE6 756 aaKnown RBP12.92□□□□□ -0.34
VPS11-207ENST00000620429 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.92□□□□□ -0.34
VPS11-207ENST00000620429 SECISBP2LQ93073 1101 aaKnown RBP12.92□□□□□ -0.34
VPS11-207ENST00000620429 A2ML1A8K2U0 1454 aa12.92□□□□□ -0.34
VPS11-207ENST00000620429 ZNF521Q96K83 1311 aa12.92□□□□□ -0.34
VPS11-207ENST00000620429 SLFN5Q08AF3 891 aa12.91□□□□□ -0.34
VPS11-207ENST00000620429 EFCAB6Q5THR3 1501 aa12.91□□□□□ -0.34
VPS11-207ENST00000620429 XPCQ01831 940 aaPredicted RBP12.91□□□□□ -0.34
VPS11-207ENST00000620429 RGS22Q8NE09 1264 aa12.91□□□□□ -0.34
VPS11-207ENST00000620429 EIF3AQ14152 1382 aaKnown RBP12.91□□□□□ -0.34
VPS11-207ENST00000620429 CEBPAP49715 358 aaPredicted RBP12.9□□□□□ -0.34
VPS11-207ENST00000620429 IRX3P78415 501 aaPredicted RBP12.9□□□□□ -0.34
VPS11-207ENST00000620429 CBX1P83916 185 aa12.9□□□□□ -0.34
VPS11-207ENST00000620429 ZNF692Q9BU19 519 aaPredicted RBP12.9□□□□□ -0.34
VPS11-207ENST00000620429 CCDC146Q8IYE0 955 aa12.9□□□□□ -0.34
VPS11-207ENST00000620429 ZC3H13Q5T200 1668 aaKnown RBP12.9□□□□□ -0.34
VPS11-207ENST00000620429 MYRIPQ8NFW9 859 aa12.9□□□□□ -0.35
VPS11-207ENST00000620429 PDLIM2Q96JY6 352 aa12.9□□□□□ -0.35
VPS11-207ENST00000620429 ZKSCAN5Q9Y2L8 839 aa12.9□□□□□ -0.35
VPS11-207ENST00000620429 NCOA3Q9Y6Q9 1424 aa12.89□□□□□ -0.35
VPS11-207ENST00000620429 BCAR3O75815 825 aa12.89□□□□□ -0.35
VPS11-207ENST00000620429 SCAF11Q99590 1463 aaKnown RBP12.89□□□□□ -0.35
VPS11-207ENST00000620429 CGNQ9P2M7 1197 aaKnown RBP12.89□□□□□ -0.35
VPS11-207ENST00000620429 DDIT3P35638 169 aa12.88□□□□□ -0.35
VPS11-207ENST00000620429 DNAJC2Q99543 621 aaKnown RBP12.88□□□□□ -0.35
VPS11-207ENST00000620429 IQGAP1P46940 1657 aa12.88□□□□□ -0.35
VPS11-207ENST00000620429 GTF2F1P35269 517 aaKnown RBP eCLIP12.88□□□□□ -0.35
VPS11-207ENST00000620429 IRX5P78411 483 aaPredicted RBP12.88□□□□□ -0.35
VPS11-207ENST00000620429 IGHDP01880 384 aa12.87□□□□□ -0.35
VPS11-207ENST00000620429 SPINK5Q9NQ38 1064 aaPredicted RBP12.87□□□□□ -0.35
VPS11-207ENST00000620429 CFAP65Q6ZU64 1925 aaKnown RBP12.87□□□□□ -0.35
VPS11-207ENST00000620429 ZBTB22O15209 634 aa12.87□□□□□ -0.35
VPS11-207ENST00000620429 ATP2B3Q16720 1220 aa12.87□□□□□ -0.35
VPS11-207ENST00000620429 AMER1Q5JTC6 1135 aaPredicted RBP12.87□□□□□ -0.35
VPS11-207ENST00000620429 ZNF710Q8N1W2 664 aa12.87□□□□□ -0.35
VPS11-207ENST00000620429 SENP3Q9H4L4 574 aaPredicted RBP12.87□□□□□ -0.35
VPS11-207ENST00000620429 APAF1O14727 1248 aa12.86□□□□□ -0.35
VPS11-207ENST00000620429 NUTM2DQ5VT03 806 aaPredicted RBP12.86□□□□□ -0.35
VPS11-207ENST00000620429 GBP4Q96PP9 640 aa12.86□□□□□ -0.35
VPS11-207ENST00000620429 RBM25P49756 843 aaKnown RBP12.86□□□□□ -0.35
VPS11-207ENST00000620429 TRMT2AQ8IZ69 625 aaKnown RBP12.86□□□□□ -0.35
VPS11-207ENST00000620429 NOS1P29475 1434 aa12.86□□□□□ -0.35
VPS11-207ENST00000620429 NKTRP30414 1462 aaKnown RBP12.85□□□□□ -0.35
VPS11-207ENST00000620429 LMTK2Q8IWU2 1503 aa12.85□□□□□ -0.35
VPS11-207ENST00000620429 RNF216Q9NWF9 866 aaPredicted RBP12.85□□□□□ -0.35
VPS11-207ENST00000620429 CIZ1Q9ULV3 898 aaPredicted RBP12.85□□□□□ -0.35
VPS11-207ENST00000620429 MED14O60244 1454 aa12.85□□□□□ -0.35
VPS11-207ENST00000620429 SPRYD3Q8NCJ5 442 aa12.84□□□□□ -0.35
VPS11-207ENST00000620429 PRIMPOLQ96LW4 560 aa12.84□□□□□ -0.35
VPS11-207ENST00000620429 SYNMO15061 1565 aa12.84□□□□□ -0.35
VPS11-207ENST00000620429 HSP90AB1P08238 724 aaKnown RBP12.83□□□□□ -0.35
VPS11-207ENST00000620429 PLPPR3Q6T4P5 718 aa12.83□□□□□ -0.35
VPS11-207ENST00000620429 TNPO1Q92973 898 aaKnown RBP12.83□□□□□ -0.36
VPS11-207ENST00000620429 CGNL1Q0VF96 1302 aa12.83□□□□□ -0.36
VPS11-207ENST00000620429 MYOM2P54296 1465 aa12.83□□□□□ -0.36
VPS11-207ENST00000620429 E9PSI1 815 aa12.82□□□□□ -0.36
VPS11-207ENST00000620429 HMGN5P82970 282 aaKnown RBP12.82□□□□□ -0.36
VPS11-207ENST00000620429 TMEM132EQ6IEE7 984 aa12.82□□□□□ -0.36
VPS11-207ENST00000620429 ABCC3O15438 1527 aa12.82□□□□□ -0.36
VPS11-207ENST00000620429 KIF1BO60333 1816 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 1375.1 ms