RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 FANCIQ9NVI1 1328 aa16.1■□□□□ 0.17
CIITA-212ENST00000618207 PPIP5K1Q6PFW1 1433 aa16.1■□□□□ 0.17
CIITA-212ENST00000618207 TMEM2Q9UHN6 1383 aa16.1■□□□□ 0.17
CIITA-212ENST00000618207 RRS1Q15050 365 aaKnown RBP16.09■□□□□ 0.17
CIITA-212ENST00000618207 NRXN3Q9Y4C0 1643 aa16.09■□□□□ 0.17
CIITA-212ENST00000618207 NGEFQ8N5V2 710 aa16.08■□□□□ 0.16
CIITA-212ENST00000618207 POLKQ9UBT6 870 aa16.08■□□□□ 0.16
CIITA-212ENST00000618207 TMPOP42166 694 aaKnown RBP16.08■□□□□ 0.16
CIITA-212ENST00000618207 SETD1AO15047 1707 aaKnown RBP16.07■□□□□ 0.16
CIITA-212ENST00000618207 RIPK4P57078 832 aa16.07■□□□□ 0.16
CIITA-212ENST00000618207 CCDC61Q9Y6R9 512 aa16.07■□□□□ 0.16
CIITA-212ENST00000618207 NLRP1Q9C000 1473 aa16.07■□□□□ 0.16
CIITA-212ENST00000618207 RGS3P49796 1198 aa16.07■□□□□ 0.16
CIITA-212ENST00000618207 LAS1LQ9Y4W2 734 aaKnown RBP16.07■□□□□ 0.16
CIITA-212ENST00000618207 ROBO2Q9HCK4 1378 aa16.07■□□□□ 0.16
CIITA-212ENST00000618207 RARSP54136 660 aaKnown RBP16.06■□□□□ 0.16
CIITA-212ENST00000618207 PLEKHF1Q96S99 279 aa16.06■□□□□ 0.16
CIITA-212ENST00000618207 IQSEC2Q5JU85 1478 aa16.06■□□□□ 0.16
CIITA-212ENST00000618207 PRR36Q9H6K5 1346 aa16.06■□□□□ 0.16
CIITA-212ENST00000618207 WDR63Q8IWG1 891 aa16.05■□□□□ 0.16
CIITA-212ENST00000618207 EID1Q9Y6B2 187 aa16.05■□□□□ 0.16
CIITA-212ENST00000618207 PDE4AP27815 886 aa16.05■□□□□ 0.16
CIITA-212ENST00000618207 PRKAR2BP31323 418 aa16.05■□□□□ 0.16
CIITA-212ENST00000618207 TCERG1O14776 1098 aaKnown RBP16.04■□□□□ 0.16
CIITA-212ENST00000618207 PHF23Q9BUL5 403 aaPredicted RBP16.04■□□□□ 0.16
CIITA-212ENST00000618207 PMFBP1Q8TBY8 1022 aa16.04■□□□□ 0.16
CIITA-212ENST00000618207 THUMPD2Q9BTF0 503 aaKnown RBP16.04■□□□□ 0.16
CIITA-212ENST00000618207 MYH16Q9H6N6 1097 aa16.04■□□□□ 0.16
CIITA-212ENST00000618207 TRIM35Q9UPQ4 493 aa16.04■□□□□ 0.16
CIITA-212ENST00000618207 EXOSC9Q06265 439 aaKnown RBP16.03■□□□□ 0.16
CIITA-212ENST00000618207 COG3Q96JB2 828 aa16.03■□□□□ 0.16
CIITA-212ENST00000618207 MAP2P11137 1827 aaKnown RBP16.03■□□□□ 0.16
CIITA-212ENST00000618207 DLC1Q96QB1 1528 aa16.03■□□□□ 0.16
CIITA-212ENST00000618207 UBR1Q8IWV7 1749 aa16.03■□□□□ 0.16
CIITA-212ENST00000618207 RLBP1P12271 317 aa16.02■□□□□ 0.16
CIITA-212ENST00000618207 ANP32AP39687 249 aaKnown RBP16.02■□□□□ 0.15
CIITA-212ENST00000618207 AMOTL2Q9Y2J4 779 aa16.02■□□□□ 0.15
CIITA-212ENST00000618207 PHACTR3Q96KR7 559 aa16.01■□□□□ 0.15
CIITA-212ENST00000618207 KIF20BQ96Q89 1820 aa16.01■□□□□ 0.15
CIITA-212ENST00000618207 ADAMTS13Q76LX8 1427 aa16.01■□□□□ 0.15
CIITA-212ENST00000618207 NEFMP07197 916 aa16.01■□□□□ 0.15
CIITA-212ENST00000618207 CCDC27Q2M243 656 aa16.01■□□□□ 0.15
CIITA-212ENST00000618207 COL3A1P02461 1466 aaPredicted RBP16.01■□□□□ 0.15
CIITA-212ENST00000618207 IGHDP01880 384 aa16■□□□□ 0.15
CIITA-212ENST00000618207 CENPQQ7L2Z9 268 aaPredicted RBP16■□□□□ 0.15
CIITA-212ENST00000618207 RBM33Q96EV2 1170 aaKnown RBP16■□□□□ 0.15
CIITA-212ENST00000618207 KDM2BQ8NHM5 1336 aa16■□□□□ 0.15
CIITA-212ENST00000618207 ATP7BP35670 1465 aa16■□□□□ 0.15
CIITA-212ENST00000618207 ACEP12821 1306 aa16■□□□□ 0.15
CIITA-212ENST00000618207 ANKRD26Q9UPS8 1709 aa15.99■□□□□ 0.15
CIITA-212ENST00000618207 CPS1P31327 1500 aa15.99■□□□□ 0.15
CIITA-212ENST00000618207 PAK3O75914 559 aaPredicted RBP15.99■□□□□ 0.15
CIITA-212ENST00000618207 SMC4Q9NTJ3 1288 aa15.99■□□□□ 0.15
CIITA-212ENST00000618207 EDC4Q6P2E9 1401 aaKnown RBP15.98■□□□□ 0.15
CIITA-212ENST00000618207 CPSF1Q10570 1443 aaKnown RBP15.98■□□□□ 0.15
CIITA-212ENST00000618207 ELL2O00472 640 aaPredicted RBP15.98■□□□□ 0.15
CIITA-212ENST00000618207 BACH2Q9BYV9 841 aa15.98■□□□□ 0.15
CIITA-212ENST00000618207 PDE3AQ14432 1141 aa15.97■□□□□ 0.15
CIITA-212ENST00000618207 RSPH6AQ9H0K4 717 aa15.97■□□□□ 0.15
CIITA-212ENST00000618207 MED14O60244 1454 aa15.97■□□□□ 0.15
CIITA-212ENST00000618207 FCHSD2O94868 740 aa15.97■□□□□ 0.15
CIITA-212ENST00000618207 PNPLA6Q8IY17 1366 aa15.96■□□□□ 0.15
CIITA-212ENST00000618207 FAM135BQ49AJ0 1406 aa15.96■□□□□ 0.15
CIITA-212ENST00000618207 FTSJ3Q8IY81 847 aaKnown RBP15.96■□□□□ 0.15
CIITA-212ENST00000618207 UBE2Q2Q8WVN8 375 aa15.96■□□□□ 0.15
CIITA-212ENST00000618207 PTPRUQ92729 1446 aa15.96■□□□□ 0.15
CIITA-212ENST00000618207 PLEKHG1Q9ULL1 1385 aa15.95■□□□□ 0.14
CIITA-212ENST00000618207 THEMISQ8N1K5 641 aaPredicted RBP15.95■□□□□ 0.14
CIITA-212ENST00000618207 SSH1Q8WYL5 1049 aa15.95■□□□□ 0.14
CIITA-212ENST00000618207 DCTN1Q14203 1278 aa15.95■□□□□ 0.14
CIITA-212ENST00000618207 NUTM2GQ5VZR2 741 aa15.95■□□□□ 0.14
CIITA-212ENST00000618207 ANO8Q9HCE9 1232 aaPredicted RBP15.95■□□□□ 0.14
CIITA-212ENST00000618207 C3P01024 1663 aa15.94■□□□□ 0.14
CIITA-212ENST00000618207 FAM83GA6ND36 823 aa15.94■□□□□ 0.14
CIITA-212ENST00000618207 IL13P35225 146 aa15.94■□□□□ 0.14
CIITA-212ENST00000618207 ZNF692Q9BU19 519 aaPredicted RBP15.94■□□□□ 0.14
CIITA-212ENST00000618207 PNNQ9H307 717 aaKnown RBP15.94■□□□□ 0.14
CIITA-212ENST00000618207 TTC21BQ7Z4L5 1316 aa15.94■□□□□ 0.14
CIITA-212ENST00000618207 PLEKHG5O94827 1062 aa15.94■□□□□ 0.14
CIITA-212ENST00000618207 NGDNQ8NEJ9 315 aaKnown RBP15.94■□□□□ 0.14
CIITA-212ENST00000618207 NOP58Q9Y2X3 529 aaKnown RBP15.94■□□□□ 0.14
CIITA-212ENST00000618207 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.94■□□□□ 0.14
CIITA-212ENST00000618207 LRRC7Q96NW7 1537 aa15.94■□□□□ 0.14
CIITA-212ENST00000618207 ADGRB2O60241 1585 aa15.93■□□□□ 0.14
CIITA-212ENST00000618207 MS4A1P11836 297 aa15.93■□□□□ 0.14
CIITA-212ENST00000618207 AEBP1Q8IUX7 1158 aa15.93■□□□□ 0.14
CIITA-212ENST00000618207 TECPR2O15040 1411 aa15.93■□□□□ 0.14
CIITA-212ENST00000618207 SIRT1Q96EB6 747 aa15.93■□□□□ 0.14
CIITA-212ENST00000618207 PCDHB15Q9Y5E8 787 aa15.93■□□□□ 0.14
CIITA-212ENST00000618207 ZKSCAN2Q63HK3 967 aa15.92■□□□□ 0.14
CIITA-212ENST00000618207 IPO9Q96P70 1041 aaKnown RBP15.92■□□□□ 0.14
CIITA-212ENST00000618207 FER1L4A9Z1Z3 1794 aa15.92■□□□□ 0.14
CIITA-212ENST00000618207 CDC42BPGQ6DT37 1551 aa15.92■□□□□ 0.14
CIITA-212ENST00000618207 KCNA6P17658 529 aa15.91■□□□□ 0.14
CIITA-212ENST00000618207 NOB1Q9ULX3 412 aaKnown RBP15.91■□□□□ 0.14
CIITA-212ENST00000618207 HSP90AB2PQ58FF8 381 aa15.91■□□□□ 0.14
CIITA-212ENST00000618207 ZBTB47Q9UFB7 747 aaPredicted RBP15.91■□□□□ 0.14
CIITA-212ENST00000618207 SULT6B1Q6IMI4 303 aa15.9■□□□□ 0.14
CIITA-212ENST00000618207 ITPRIPQ8IWB1 547 aa15.9■□□□□ 0.14
CIITA-212ENST00000618207 DZIP1LQ8IYY4 767 aaKnown RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms