RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 TSHZ2Q9NRE2 1034 aa10.32□□□□□ -0.76
NEK3-207ENST00000617054 FAM135BQ49AJ0 1406 aa10.31□□□□□ -0.76
NEK3-207ENST00000617054 PLEKHG5O94827 1062 aa10.31□□□□□ -0.76
NEK3-207ENST00000617054 EMILIN1Q9Y6C2 1016 aa10.31□□□□□ -0.76
NEK3-207ENST00000617054 TECPR2O15040 1411 aa10.31□□□□□ -0.76
NEK3-207ENST00000617054 POLR3AO14802 1390 aaPredicted RBP10.31□□□□□ -0.76
NEK3-207ENST00000617054 NINLQ9Y2I6 1382 aa10.31□□□□□ -0.76
NEK3-207ENST00000617054 PAXIP1Q6ZW49 1069 aaPredicted RBP10.31□□□□□ -0.76
NEK3-207ENST00000617054 IFNLR1Q8IU57 520 aaPredicted RBP10.31□□□□□ -0.76
NEK3-207ENST00000617054 SIRT1Q96EB6 747 aa10.31□□□□□ -0.76
NEK3-207ENST00000617054 HSPA2P54652 639 aa10.3□□□□□ -0.76
NEK3-207ENST00000617054 NUTM2GQ5VZR2 741 aa10.3□□□□□ -0.76
NEK3-207ENST00000617054 CFAP53Q96M91 514 aa10.3□□□□□ -0.76
NEK3-207ENST00000617054 ADAMTSL3P82987 1691 aa10.29□□□□□ -0.76
NEK3-207ENST00000617054 B4GALNT3Q6L9W6 998 aa10.29□□□□□ -0.76
NEK3-207ENST00000617054 POLKQ9UBT6 870 aa10.29□□□□□ -0.76
NEK3-207ENST00000617054 TCP11L2Q8N4U5 519 aa10.29□□□□□ -0.76
NEK3-207ENST00000617054 RCAN3Q9UKA8 241 aa10.29□□□□□ -0.76
NEK3-207ENST00000617054 CPS1P31327 1500 aa10.29□□□□□ -0.76
NEK3-207ENST00000617054 ATP7BP35670 1465 aa10.28□□□□□ -0.76
NEK3-207ENST00000617054 CPSF1Q10570 1443 aaKnown RBP10.28□□□□□ -0.76
NEK3-207ENST00000617054 NGDNQ8NEJ9 315 aaKnown RBP10.28□□□□□ -0.76
NEK3-207ENST00000617054 C14orf37Q86TY3 774 aa10.28□□□□□ -0.76
NEK3-207ENST00000617054 NSD2O96028 1365 aa10.27□□□□□ -0.76
NEK3-207ENST00000617054 GOLGA2Q08379 1002 aa10.27□□□□□ -0.76
NEK3-207ENST00000617054 HMOX1P09601 288 aa10.27□□□□□ -0.77
NEK3-207ENST00000617054 COG3Q96JB2 828 aa10.27□□□□□ -0.77
NEK3-207ENST00000617054 DUSP27Q5VZP5 1158 aa10.27□□□□□ -0.77
NEK3-207ENST00000617054 SETD1BQ9UPS6 1966 aaKnown RBP10.26□□□□□ -0.77
NEK3-207ENST00000617054 PDE3BQ13370 1112 aa10.26□□□□□ -0.77
NEK3-207ENST00000617054 WWC1Q8IX03 1113 aa10.26□□□□□ -0.77
NEK3-207ENST00000617054 RUNDC1Q96C34 613 aa10.26□□□□□ -0.77
NEK3-207ENST00000617054 ZNF521Q96K83 1311 aa10.26□□□□□ -0.77
NEK3-207ENST00000617054 DIAPH1O60610 1272 aaKnown RBP10.26□□□□□ -0.77
NEK3-207ENST00000617054 PAK3O75914 559 aaPredicted RBP10.26□□□□□ -0.77
NEK3-207ENST00000617054 KNDC1Q76NI1 1749 aa10.26□□□□□ -0.77
NEK3-207ENST00000617054 USP32Q8NFA0 1604 aa10.26□□□□□ -0.77
NEK3-207ENST00000617054 NKTRP30414 1462 aaKnown RBP10.26□□□□□ -0.77
NEK3-207ENST00000617054 TTC21BQ7Z4L5 1316 aa10.26□□□□□ -0.77
NEK3-207ENST00000617054 RGPD8O14715 1765 aaPredicted RBP10.25□□□□□ -0.77
NEK3-207ENST00000617054 SHPRHQ149N8 1683 aa10.25□□□□□ -0.77
NEK3-207ENST00000617054 ZNF692Q9BU19 519 aaPredicted RBP10.25□□□□□ -0.77
NEK3-207ENST00000617054 EDC4Q6P2E9 1401 aaKnown RBP10.25□□□□□ -0.77
NEK3-207ENST00000617054 XPCQ01831 940 aaPredicted RBP10.25□□□□□ -0.77
NEK3-207ENST00000617054 SLFN5Q08AF3 891 aa10.25□□□□□ -0.77
NEK3-207ENST00000617054 PLEKHG3A1L390 1219 aa10.24□□□□□ -0.77
NEK3-207ENST00000617054 RRP1P56182 461 aaKnown RBP10.24□□□□□ -0.77
NEK3-207ENST00000617054 C20orf194Q5TEA3 1177 aa10.24□□□□□ -0.77
NEK3-207ENST00000617054 ESCO1Q5FWF5 840 aa10.23□□□□□ -0.77
NEK3-207ENST00000617054 EXOC6Q8TAG9 804 aa10.23□□□□□ -0.77
NEK3-207ENST00000617054 MAP2P11137 1827 aaKnown RBP10.23□□□□□ -0.77
NEK3-207ENST00000617054 CDC42BPGQ6DT37 1551 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 PLEKHF1Q96S99 279 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 NPHP4O75161 1426 aaPredicted RBP10.22□□□□□ -0.77
NEK3-207ENST00000617054 PTCH1Q13635 1447 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 INSRP06213 1382 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 RNF123Q5XPI4 1314 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 BCAR3O75815 825 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 PHACTR3Q96KR7 559 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 ORAI2Q96SN7 254 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 KIF20BQ96Q89 1820 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 KDM4FA0A1W2PPD8 638 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 HSP90AB2PQ58FF8 381 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 PPP4R2Q9NY27 417 aa10.22□□□□□ -0.77
NEK3-207ENST00000617054 PRKAR2BP31323 418 aa10.21□□□□□ -0.77
NEK3-207ENST00000617054 PROSER2Q86WR7 435 aaPredicted RBP10.21□□□□□ -0.77
NEK3-207ENST00000617054 DIP2AQ14689 1571 aa10.21□□□□□ -0.77
NEK3-207ENST00000617054 USP6P35125 1406 aa10.21□□□□□ -0.78
NEK3-207ENST00000617054 NLRP6P59044 892 aa10.21□□□□□ -0.78
NEK3-207ENST00000617054 TSR2Q969E8 191 aaKnown RBP10.2□□□□□ -0.78
NEK3-207ENST00000617054 COL3A1P02461 1466 aaPredicted RBP10.2□□□□□ -0.78
NEK3-207ENST00000617054 FOXO3O43524 673 aa10.2□□□□□ -0.78
NEK3-207ENST00000617054 TMPOP42166 694 aaKnown RBP10.2□□□□□ -0.78
NEK3-207ENST00000617054 RIPK4P57078 832 aa10.2□□□□□ -0.78
NEK3-207ENST00000617054 VSIG10Q8N0Z9 540 aa10.2□□□□□ -0.78
NEK3-207ENST00000617054 ABTB2Q8N961 1025 aa10.2□□□□□ -0.78
NEK3-207ENST00000617054 THUMPD2Q9BTF0 503 aaKnown RBP10.2□□□□□ -0.78
NEK3-207ENST00000617054 BCL2L13Q9BXK5 485 aa10.2□□□□□ -0.78
NEK3-207ENST00000617054 MAPK8IP3Q9UPT6 1336 aa10.2□□□□□ -0.78
NEK3-207ENST00000617054 ZBTB7CA1YPR0 619 aa10.2□□□□□ -0.78
NEK3-207ENST00000617054 IL13P35225 146 aa10.2□□□□□ -0.78
NEK3-207ENST00000617054 LMOD2Q6P5Q4 547 aa10.2□□□□□ -0.78
NEK3-207ENST00000617054 AEBP1Q8IUX7 1158 aa10.2□□□□□ -0.78
NEK3-207ENST00000617054 PNPLA6Q8IY17 1366 aa10.19□□□□□ -0.78
NEK3-207ENST00000617054 TRMT2AQ8IZ69 625 aaKnown RBP10.19□□□□□ -0.78
NEK3-207ENST00000617054 XRN1Q8IZH2 1706 aaKnown RBP10.19□□□□□ -0.78
NEK3-207ENST00000617054 DDX17Q92841 729 aaKnown RBP10.19□□□□□ -0.78
NEK3-207ENST00000617054 E9PSI1 815 aa10.19□□□□□ -0.78
NEK3-207ENST00000617054 TRIM35Q9UPQ4 493 aa10.19□□□□□ -0.78
NEK3-207ENST00000617054 ITSN1Q15811 1721 aa10.19□□□□□ -0.78
NEK3-207ENST00000617054 ANKRD26Q9UPS8 1709 aa10.19□□□□□ -0.78
NEK3-207ENST00000617054 PHF8Q9UPP1 1060 aa10.18□□□□□ -0.78
NEK3-207ENST00000617054 LAS1LQ9Y4W2 734 aaKnown RBP10.18□□□□□ -0.78
NEK3-207ENST00000617054 ADGRB2O60241 1585 aa10.18□□□□□ -0.78
NEK3-207ENST00000617054 ZNF142P52746 1687 aaPredicted RBP10.18□□□□□ -0.78
NEK3-207ENST00000617054 CCDC136Q96JN2 1154 aa10.18□□□□□ -0.78
NEK3-207ENST00000617054 RSPH6AQ9H0K4 717 aa10.18□□□□□ -0.78
NEK3-207ENST00000617054 CHD2O14647 1828 aaKnown RBP10.18□□□□□ -0.78
NEK3-207ENST00000617054 MON2Q7Z3U7 1717 aa10.18□□□□□ -0.78
NEK3-207ENST00000617054 PSME1Q06323 249 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms