RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CCDC9Q9Y3X0 531 aaKnown RBP27.56■■■□□ 2
CDX1-202ENST00000616154 TOPAZ1Q8N9V7 1692 aa27.56■■■□□ 2
CDX1-202ENST00000616154 NUDT16Q96DE0 195 aaKnown RBP27.54■■■□□ 2
CDX1-202ENST00000616154 ZRANB1Q9UGI0 708 aa27.53■■■□□ 2
CDX1-202ENST00000616154 BTG4Q9NY30 223 aa27.52■■■□□ 2
CDX1-202ENST00000616154 PAK3O75914 559 aaPredicted RBP27.5■■□□□ 1.99
CDX1-202ENST00000616154 SRCAPQ6ZRS2 3230 aa27.5■■□□□ 1.99
CDX1-202ENST00000616154 CDK19Q9BWU1 502 aa27.49■■□□□ 1.99
CDX1-202ENST00000616154 PHRF1Q9P1Y6 1649 aaKnown RBP27.49■■□□□ 1.99
CDX1-202ENST00000616154 KRT27Q7Z3Y8 459 aa27.48■■□□□ 1.99
CDX1-202ENST00000616154 POLR3AO14802 1390 aaPredicted RBP27.47■■□□□ 1.99
CDX1-202ENST00000616154 SF3B2Q13435 895 aaKnown RBP27.43■■□□□ 1.98
CDX1-202ENST00000616154 FAM98CQ17RN3 349 aaKnown RBP27.43■■□□□ 1.98
CDX1-202ENST00000616154 NBPF1Q3BBV0 1214 aa27.43■■□□□ 1.98
CDX1-202ENST00000616154 PRDM11Q9NQV5 511 aa27.43■■□□□ 1.98
CDX1-202ENST00000616154 CCDC61Q9Y6R9 512 aa27.43■■□□□ 1.98
CDX1-202ENST00000616154 SPATA31A5Q5VU36 1347 aa27.43■■□□□ 1.98
CDX1-202ENST00000616154 SPATA31A7Q8IWB4 1347 aa27.43■■□□□ 1.98
CDX1-202ENST00000616154 THSD7AQ9UPZ6 1657 aa27.42■■□□□ 1.98
CDX1-202ENST00000616154 ACEP12821 1306 aa27.42■■□□□ 1.98
CDX1-202ENST00000616154 A0A0G2JS52 829 aa27.41■■□□□ 1.98
CDX1-202ENST00000616154 PLEKHG3A1L390 1219 aa27.41■■□□□ 1.98
CDX1-202ENST00000616154 MYT1Q01538 1121 aa27.41■■□□□ 1.98
CDX1-202ENST00000616154 DEFB132Q7Z7B7 95 aa27.41■■□□□ 1.98
CDX1-202ENST00000616154 KIAA0232Q92628 1395 aa27.4■■□□□ 1.98
CDX1-202ENST00000616154 NBPF8Q3BBV2 869 aa27.4■■□□□ 1.98
CDX1-202ENST00000616154 QRICH2Q9H0J4 1663 aa27.39■■□□□ 1.97
CDX1-202ENST00000616154 CENPJQ9HC77 1338 aaPredicted RBP27.37■■□□□ 1.97
CDX1-202ENST00000616154 NRKQ7Z2Y5 1582 aa27.37■■□□□ 1.97
CDX1-202ENST00000616154 RGPD1P0DJD0 1748 aa27.36■■□□□ 1.97
CDX1-202ENST00000616154 CHRNA2Q15822 529 aa27.34■■□□□ 1.97
CDX1-202ENST00000616154 NUTM2GQ5VZR2 741 aa27.34■■□□□ 1.97
CDX1-202ENST00000616154 PPIP5K1Q6PFW1 1433 aa27.34■■□□□ 1.97
CDX1-202ENST00000616154 SPATA31A1Q5TZJ5 1347 aa27.33■■□□□ 1.97
CDX1-202ENST00000616154 ZC3H6P61129 1189 aaKnown RBP27.32■■□□□ 1.96
CDX1-202ENST00000616154 SRPK2P78362 688 aaKnown RBP27.32■■□□□ 1.96
CDX1-202ENST00000616154 ABTB2Q8N961 1025 aa27.31■■□□□ 1.96
CDX1-202ENST00000616154 USP19O94966 1318 aa27.31■■□□□ 1.96
CDX1-202ENST00000616154 TRPM1Q7Z4N2 1603 aa27.3■■□□□ 1.96
CDX1-202ENST00000616154 BAG6P46379 1132 aa27.3■■□□□ 1.96
CDX1-202ENST00000616154 LMO7Q8WWI1 1683 aa27.3■■□□□ 1.96
CDX1-202ENST00000616154 TNS1Q9HBL0 1735 aaKnown RBP27.29■■□□□ 1.96
CDX1-202ENST00000616154 L3MBTL2Q969R5 705 aa27.29■■□□□ 1.96
CDX1-202ENST00000616154 BRD4O60885 1362 aaPredicted RBP27.29■■□□□ 1.96
CDX1-202ENST00000616154 CPDO75976 1380 aa27.29■■□□□ 1.96
CDX1-202ENST00000616154 CABP2Q9NPB3 220 aa27.28■■□□□ 1.96
CDX1-202ENST00000616154 STRN4Q9NRL3 753 aa27.28■■□□□ 1.96
CDX1-202ENST00000616154 SSH2Q76I76 1423 aa27.28■■□□□ 1.96
CDX1-202ENST00000616154 CAMTA1Q9Y6Y1 1673 aa27.27■■□□□ 1.96
CDX1-202ENST00000616154 FAM182BQ5T319 152 aa27.26■■□□□ 1.95
CDX1-202ENST00000616154 TRIM26Q12899 539 aaPredicted RBP27.25■■□□□ 1.95
CDX1-202ENST00000616154 NLRP13Q86W25 1043 aa27.24■■□□□ 1.95
CDX1-202ENST00000616154 DISP2A7MBM2 1401 aa27.24■■□□□ 1.95
CDX1-202ENST00000616154 LRP5O75197 1615 aa27.23■■□□□ 1.95
CDX1-202ENST00000616154 USP6P35125 1406 aa27.22■■□□□ 1.95
CDX1-202ENST00000616154 EVA1CP58658 441 aa27.22■■□□□ 1.95
CDX1-202ENST00000616154 BARGINQ6ZT62 677 aa27.21■■□□□ 1.95
CDX1-202ENST00000616154 SIN3AQ96ST3 1273 aa27.21■■□□□ 1.95
CDX1-202ENST00000616154 GCP02774 474 aa27.2■■□□□ 1.95
CDX1-202ENST00000616154 CABP1Q9NZU7 370 aa27.19■■□□□ 1.94
CDX1-202ENST00000616154 SLIT3O75094 1523 aa27.19■■□□□ 1.94
CDX1-202ENST00000616154 EVC2Q86UK5 1308 aa27.19■■□□□ 1.94
CDX1-202ENST00000616154 EN1Q05925 392 aaPredicted RBP27.18■■□□□ 1.94
CDX1-202ENST00000616154 LARP1Q6PKG0 1096 aaKnown RBP27.18■■□□□ 1.94
CDX1-202ENST00000616154 FAM196AQ6ZSG2 479 aa27.18■■□□□ 1.94
CDX1-202ENST00000616154 USP35Q9P2H5 1018 aa27.18■■□□□ 1.94
CDX1-202ENST00000616154 PIK3C2AO00443 1686 aa27.17■■□□□ 1.94
CDX1-202ENST00000616154 COL5A2P05997 1499 aaPredicted RBP27.17■■□□□ 1.94
CDX1-202ENST00000616154 ROCK2O75116 1388 aaKnown RBP27.16■■□□□ 1.94
CDX1-202ENST00000616154 AKAP12Q02952 1782 aa27.16■■□□□ 1.94
CDX1-202ENST00000616154 TCP11L2Q8N4U5 519 aa27.16■■□□□ 1.94
CDX1-202ENST00000616154 PARP4Q9UKK3 1724 aaKnown RBP27.16■■□□□ 1.94
CDX1-202ENST00000616154 PSDA5PKW4 1024 aaPredicted RBP27.14■■□□□ 1.93
CDX1-202ENST00000616154 THRAP3Q9Y2W1 955 aaKnown RBP27.14■■□□□ 1.93
CDX1-202ENST00000616154 NLRP6P59044 892 aa27.13■■□□□ 1.93
CDX1-202ENST00000616154 NEUROD1Q13562 356 aa27.13■■□□□ 1.93
CDX1-202ENST00000616154 TRIM37O94972 964 aa27.12■■□□□ 1.93
CDX1-202ENST00000616154 PDE3BQ13370 1112 aa27.12■■□□□ 1.93
CDX1-202ENST00000616154 COL18A1P39060 1754 aa27.11■■□□□ 1.93
CDX1-202ENST00000616154 AATKQ6ZMQ8 1374 aa27.11■■□□□ 1.93
CDX1-202ENST00000616154 CRB1P82279 1406 aa27.1■■□□□ 1.93
CDX1-202ENST00000616154 PARD3Q8TEW0 1356 aa27.09■■□□□ 1.93
CDX1-202ENST00000616154 EZH2Q15910 746 aaKnown RBP27.09■■□□□ 1.93
CDX1-202ENST00000616154 CAMKK2Q96RR4 588 aa27.09■■□□□ 1.93
CDX1-202ENST00000616154 RREB1Q92766 1687 aa27.08■■□□□ 1.93
CDX1-202ENST00000616154 ZNF692Q9BU19 519 aaPredicted RBP27.07■■□□□ 1.92
CDX1-202ENST00000616154 WNK3Q9BYP7 1800 aa27.05■■□□□ 1.92
CDX1-202ENST00000616154 ZBTB7CA1YPR0 619 aa27.05■■□□□ 1.92
CDX1-202ENST00000616154 APBA3O96018 575 aa27.05■■□□□ 1.92
CDX1-202ENST00000616154 TTC21BQ7Z4L5 1316 aa27.05■■□□□ 1.92
CDX1-202ENST00000616154 CPSF1Q10570 1443 aaKnown RBP27.04■■□□□ 1.92
CDX1-202ENST00000616154 MON2Q7Z3U7 1717 aa27.04■■□□□ 1.92
CDX1-202ENST00000616154 R3HDM1Q15032 1099 aaKnown RBP27.04■■□□□ 1.92
CDX1-202ENST00000616154 LRRC37A3O60309 1634 aa27.04■■□□□ 1.92
CDX1-202ENST00000616154 SBNO2Q9Y2G9 1366 aa27.04■■□□□ 1.92
CDX1-202ENST00000616154 NUP188Q5SRE5 1749 aa27.03■■□□□ 1.92
CDX1-202ENST00000616154 PEAK1Q9H792 1746 aa27.03■■□□□ 1.92
CDX1-202ENST00000616154 TTC21AQ8NDW8 1320 aa27.03■■□□□ 1.92
CDX1-202ENST00000616154 RGPD5Q99666 1765 aa27.02■■□□□ 1.92
CDX1-202ENST00000616154 C11orf95C9JLR9 678 aaPredicted RBP27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms