RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 KIF1AQ12756 1690 aa8.09□□□□□ -1.11
CPNE3-208ENST00000614678 ALS2Q96Q42 1657 aa8.09□□□□□ -1.11
CPNE3-208ENST00000614678 USP47Q96K76 1375 aa8.09□□□□□ -1.11
CPNE3-208ENST00000614678 ABCA3Q99758 1704 aa8.09□□□□□ -1.11
CPNE3-208ENST00000614678 GOLGB1Q14789 3259 aaKnown RBP8.09□□□□□ -1.11
CPNE3-208ENST00000614678 ZBTB7CA1YPR0 619 aa8.09□□□□□ -1.11
CPNE3-208ENST00000614678 USP21Q9UK80 565 aa8.09□□□□□ -1.11
CPNE3-208ENST00000614678 CD163L1Q9NR16 1453 aa8.09□□□□□ -1.11
CPNE3-208ENST00000614678 FAM182BQ5T319 152 aa8.09□□□□□ -1.11
CPNE3-208ENST00000614678 ABTB2Q8N961 1025 aa8.08□□□□□ -1.12
CPNE3-208ENST00000614678 COL22A1Q8NFW1 1626 aaPredicted RBP8.08□□□□□ -1.12
CPNE3-208ENST00000614678 PLEKHG3A1L390 1219 aa8.08□□□□□ -1.12
CPNE3-208ENST00000614678 POLR3GLQ9BT43 218 aa8.08□□□□□ -1.12
CPNE3-208ENST00000614678 POLR3AO14802 1390 aaPredicted RBP8.08□□□□□ -1.12
CPNE3-208ENST00000614678 HAP1P54257 671 aaPredicted RBP8.08□□□□□ -1.12
CPNE3-208ENST00000614678 EVC2Q86UK5 1308 aa8.08□□□□□ -1.12
CPNE3-208ENST00000614678 NME9Q86XW9 330 aa8.07□□□□□ -1.12
CPNE3-208ENST00000614678 CRYBG1Q9Y4K1 1723 aa8.07□□□□□ -1.12
CPNE3-208ENST00000614678 SOCS7O14512 581 aa8.07□□□□□ -1.12
CPNE3-208ENST00000614678 USP35Q9P2H5 1018 aa8.07□□□□□ -1.12
CPNE3-208ENST00000614678 KIAA0232Q92628 1395 aa8.07□□□□□ -1.12
CPNE3-208ENST00000614678 BTG4Q9NY30 223 aa8.07□□□□□ -1.12
CPNE3-208ENST00000614678 FNBP4Q8N3X1 1017 aaPredicted RBP8.06□□□□□ -1.12
CPNE3-208ENST00000614678 USP6P35125 1406 aa8.06□□□□□ -1.12
CPNE3-208ENST00000614678 SBNO1A3KN83 1393 aa8.06□□□□□ -1.12
CPNE3-208ENST00000614678 ITSN1Q15811 1721 aa8.06□□□□□ -1.12
CPNE3-208ENST00000614678 MARF1Q9Y4F3 1742 aaKnown RBP8.06□□□□□ -1.12
CPNE3-208ENST00000614678 HSPA5P11021 654 aaKnown RBP8.06□□□□□ -1.12
CPNE3-208ENST00000614678 AXIN2Q9Y2T1 843 aa8.06□□□□□ -1.12
CPNE3-208ENST00000614678 RGS12O14924 1447 aa8.06□□□□□ -1.12
CPNE3-208ENST00000614678 PIK3C2AO00443 1686 aa8.06□□□□□ -1.12
CPNE3-208ENST00000614678 SSH2Q76I76 1423 aa8.05□□□□□ -1.12
CPNE3-208ENST00000614678 NLRP6P59044 892 aa8.05□□□□□ -1.12
CPNE3-208ENST00000614678 STRN4Q9NRL3 753 aa8.05□□□□□ -1.12
CPNE3-208ENST00000614678 A0A1W2PP64 1363 aa8.05□□□□□ -1.12
CPNE3-208ENST00000614678 RXRBP28702 533 aa8.05□□□□□ -1.12
CPNE3-208ENST00000614678 PLCH1Q4KWH8 1693 aa8.04□□□□□ -1.12
CPNE3-208ENST00000614678 SLIT2O94813 1529 aa8.04□□□□□ -1.12
CPNE3-208ENST00000614678 TTC21BQ7Z4L5 1316 aa8.04□□□□□ -1.12
CPNE3-208ENST00000614678 EIF3AQ14152 1382 aaKnown RBP8.04□□□□□ -1.12
CPNE3-208ENST00000614678 GCP02774 474 aa8.04□□□□□ -1.12
CPNE3-208ENST00000614678 CPSF1Q10570 1443 aaKnown RBP8.04□□□□□ -1.12
CPNE3-208ENST00000614678 GLI3P10071 1580 aa8.04□□□□□ -1.12
CPNE3-208ENST00000614678 KTN1Q86UP2 1357 aaKnown RBP8.04□□□□□ -1.12
CPNE3-208ENST00000614678 SBNO2Q9Y2G9 1366 aa8.04□□□□□ -1.12
CPNE3-208ENST00000614678 ZNF772Q68DY9 489 aaPredicted RBP8.04□□□□□ -1.12
CPNE3-208ENST00000614678 CARD14Q9BXL6 1004 aa8.04□□□□□ -1.12
CPNE3-208ENST00000614678 CCDC9Q9Y3X0 531 aaKnown RBP8.04□□□□□ -1.12
CPNE3-208ENST00000614678 PHRF1Q9P1Y6 1649 aaKnown RBP8.04□□□□□ -1.12
CPNE3-208ENST00000614678 CNGB1Q14028 1251 aaPredicted RBP8.03□□□□□ -1.12
CPNE3-208ENST00000614678 PRDM11Q9NQV5 511 aa8.03□□□□□ -1.12
CPNE3-208ENST00000614678 AKAP12Q02952 1782 aa8.03□□□□□ -1.12
CPNE3-208ENST00000614678 UNC5CLQ8IV45 518 aa8.03□□□□□ -1.12
CPNE3-208ENST00000614678 RGPD5Q99666 1765 aa8.03□□□□□ -1.12
CPNE3-208ENST00000614678 CAMTA1Q9Y6Y1 1673 aa8.03□□□□□ -1.12
CPNE3-208ENST00000614678 FAM98CQ17RN3 349 aaKnown RBP8.02□□□□□ -1.12
CPNE3-208ENST00000614678 LARP1Q6PKG0 1096 aaKnown RBP8.02□□□□□ -1.12
CPNE3-208ENST00000614678 GJD4Q96KN9 370 aaPredicted RBP8.02□□□□□ -1.12
CPNE3-208ENST00000614678 ARHGEF10O15013 1369 aa8.02□□□□□ -1.13
CPNE3-208ENST00000614678 NRKQ7Z2Y5 1582 aa8.02□□□□□ -1.13
CPNE3-208ENST00000614678 ATRNO75882 1429 aa8.02□□□□□ -1.13
CPNE3-208ENST00000614678 CLSPNQ9HAW4 1339 aa8.02□□□□□ -1.13
CPNE3-208ENST00000614678 BRWD3Q6RI45 1802 aa8.02□□□□□ -1.13
CPNE3-208ENST00000614678 GGNBP2Q9H3C7 697 aa8.02□□□□□ -1.13
CPNE3-208ENST00000614678 RBM6P78332 1123 aaKnown RBP8.01□□□□□ -1.13
CPNE3-208ENST00000614678 MYOM1P52179 1685 aa8.01□□□□□ -1.13
CPNE3-208ENST00000614678 TRPC5Q9UL62 973 aaPredicted RBP8.01□□□□□ -1.13
CPNE3-208ENST00000614678 USP19O94966 1318 aa8□□□□□ -1.13
CPNE3-208ENST00000614678 MON2Q7Z3U7 1717 aa8□□□□□ -1.13
CPNE3-208ENST00000614678 NRAPQ86VF7 1730 aa8□□□□□ -1.13
CPNE3-208ENST00000614678 ATAD2Q6PL18 1390 aa8□□□□□ -1.13
CPNE3-208ENST00000614678 A0A0G2JS52 829 aa8□□□□□ -1.13
CPNE3-208ENST00000614678 MYT1Q01538 1121 aa8□□□□□ -1.13
CPNE3-208ENST00000614678 RRS1Q15050 365 aaKnown RBP7.99□□□□□ -1.13
CPNE3-208ENST00000614678 SEPT12Q8IYM1 358 aa7.99□□□□□ -1.13
CPNE3-208ENST00000614678 TNNT2P45379 298 aaPredicted RBP7.99□□□□□ -1.13
CPNE3-208ENST00000614678 TMF1P82094 1093 aa7.99□□□□□ -1.13
CPNE3-208ENST00000614678 PTF1AQ7RTS3 328 aa7.99□□□□□ -1.13
CPNE3-208ENST00000614678 NLRP13Q86W25 1043 aa7.99□□□□□ -1.13
CPNE3-208ENST00000614678 UPF1Q92900 1129 aaKnown RBP eCLIP7.99□□□□□ -1.13
CPNE3-208ENST00000614678 FYB1O15117 783 aa7.98□□□□□ -1.13
CPNE3-208ENST00000614678 EIF4G2P78344 907 aaKnown RBP eCLIP7.98□□□□□ -1.13
CPNE3-208ENST00000614678 LTV1Q96GA3 475 aaPredicted RBP7.98□□□□□ -1.13
CPNE3-208ENST00000614678 TIMELESSQ9UNS1 1208 aa7.98□□□□□ -1.13
CPNE3-208ENST00000614678 COL18A1P39060 1754 aa7.97□□□□□ -1.13
CPNE3-208ENST00000614678 LMO7Q8WWI1 1683 aa7.97□□□□□ -1.13
CPNE3-208ENST00000614678 VPS72Q15906 364 aa7.97□□□□□ -1.13
CPNE3-208ENST00000614678 NFAT5O94916 1531 aa7.97□□□□□ -1.13
CPNE3-208ENST00000614678 ARHGEF25Q86VW2 580 aa7.97□□□□□ -1.13
CPNE3-208ENST00000614678 ZNF692Q9BU19 519 aaPredicted RBP7.97□□□□□ -1.13
CPNE3-208ENST00000614678 COL14A1Q05707 1796 aaKnown RBP7.97□□□□□ -1.13
CPNE3-208ENST00000614678 SPATA31A5Q5VU36 1347 aa7.97□□□□□ -1.13
CPNE3-208ENST00000614678 SPATA31A7Q8IWB4 1347 aa7.97□□□□□ -1.13
CPNE3-208ENST00000614678 SLIT3O75094 1523 aa7.97□□□□□ -1.13
CPNE3-208ENST00000614678 DEFB132Q7Z7B7 95 aa7.96□□□□□ -1.13
CPNE3-208ENST00000614678 COL5A2P05997 1499 aaPredicted RBP7.96□□□□□ -1.13
CPNE3-208ENST00000614678 HDGFL2Q7Z4V5 671 aaPredicted RBP7.96□□□□□ -1.14
CPNE3-208ENST00000614678 KIF7Q2M1P5 1343 aa7.96□□□□□ -1.14
CPNE3-208ENST00000614678 EVA1CP58658 441 aa7.96□□□□□ -1.14
CPNE3-208ENST00000614678 PANK3Q9H999 370 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms