RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 NUP153P49790 1475 aaKnown RBP16.72■□□□□ 0.27
GGA3-220ENST00000613421 CNTROBQ8N137 903 aa16.71■□□□□ 0.27
GGA3-220ENST00000613421 BECN2A8MW95 431 aa16.71■□□□□ 0.27
GGA3-220ENST00000613421 TRAK2O60296 914 aa16.71■□□□□ 0.27
GGA3-220ENST00000613421 CPLX2Q6PUV4 134 aaKnown RBP16.71■□□□□ 0.27
GGA3-220ENST00000613421 TCOF1Q13428 1488 aaKnown RBP16.71■□□□□ 0.27
GGA3-220ENST00000613421 RALGAPBQ86X10 1494 aa16.71■□□□□ 0.27
GGA3-220ENST00000613421 ATF3P18847 181 aa16.71■□□□□ 0.27
GGA3-220ENST00000613421 NFE2L2Q16236 605 aa16.71■□□□□ 0.27
GGA3-220ENST00000613421 CLASRPQ8N2M8 674 aaKnown RBP16.71■□□□□ 0.27
GGA3-220ENST00000613421 RRS1Q15050 365 aaKnown RBP16.7■□□□□ 0.26
GGA3-220ENST00000613421 MRE11P49959 708 aa16.7■□□□□ 0.26
GGA3-220ENST00000613421 CCT4P50991 539 aaKnown RBP16.7■□□□□ 0.26
GGA3-220ENST00000613421 CHD1LQ86WJ1 897 aa16.7■□□□□ 0.26
GGA3-220ENST00000613421 PLEKHO1Q53GL0 409 aaPredicted RBP16.7■□□□□ 0.26
GGA3-220ENST00000613421 TMX4Q9H1E5 349 aaPredicted RBP16.69■□□□□ 0.26
GGA3-220ENST00000613421 RARSP54136 660 aaKnown RBP16.69■□□□□ 0.26
GGA3-220ENST00000613421 ESCO1Q5FWF5 840 aa16.69■□□□□ 0.26
GGA3-220ENST00000613421 SYNE3Q6ZMZ3 975 aa16.68■□□□□ 0.26
GGA3-220ENST00000613421 HDGFL1Q5TGJ6 251 aa16.68■□□□□ 0.26
GGA3-220ENST00000613421 THEMISQ8N1K5 641 aaPredicted RBP16.68■□□□□ 0.26
GGA3-220ENST00000613421 NEK4P51957 841 aa16.68■□□□□ 0.26
GGA3-220ENST00000613421 BICD2Q8TD16 824 aa16.68■□□□□ 0.26
GGA3-220ENST00000613421 CPLX1O14810 134 aa16.67■□□□□ 0.26
GGA3-220ENST00000613421 TMEM57Q8N5G2 664 aa16.67■□□□□ 0.26
GGA3-220ENST00000613421 MCM2P49736 904 aa16.67■□□□□ 0.26
GGA3-220ENST00000613421 AKAP17AQ02040 695 aaKnown RBP16.67■□□□□ 0.26
GGA3-220ENST00000613421 DUSP27Q5VZP5 1158 aa16.67■□□□□ 0.26
GGA3-220ENST00000613421 NUDT16Q96DE0 195 aaKnown RBP16.67■□□□□ 0.26
GGA3-220ENST00000613421 CCDC61Q9Y6R9 512 aa16.67■□□□□ 0.26
GGA3-220ENST00000613421 ATP10BO94823 1461 aa16.67■□□□□ 0.26
GGA3-220ENST00000613421 APPP05067 770 aa16.66■□□□□ 0.26
GGA3-220ENST00000613421 ABCC11Q96J66 1382 aa16.66■□□□□ 0.26
GGA3-220ENST00000613421 FANCAO15360 1455 aa16.66■□□□□ 0.26
GGA3-220ENST00000613421 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.66■□□□□ 0.26
GGA3-220ENST00000613421 NOS1P29475 1434 aa16.66■□□□□ 0.26
GGA3-220ENST00000613421 TRDNQ13061 729 aa16.66■□□□□ 0.26
GGA3-220ENST00000613421 NEUROD6Q96NK8 337 aa16.66■□□□□ 0.26
GGA3-220ENST00000613421 LRPPRCP42704 1394 aaKnown RBP16.65■□□□□ 0.26
GGA3-220ENST00000613421 SLC26A8Q96RN1 970 aa16.65■□□□□ 0.26
GGA3-220ENST00000613421 FSD1Q9BTV5 496 aa16.65■□□□□ 0.26
GGA3-220ENST00000613421 TRIM29Q14134 588 aa16.65■□□□□ 0.26
GGA3-220ENST00000613421 HSP90AA2PQ14568 343 aaPredicted RBP16.65■□□□□ 0.26
GGA3-220ENST00000613421 LRRCC1Q9C099 1032 aa16.65■□□□□ 0.26
GGA3-220ENST00000613421 CREBRFQ8IUR6 639 aa16.64■□□□□ 0.25
GGA3-220ENST00000613421 PSMA5P28066 241 aa16.64■□□□□ 0.25
GGA3-220ENST00000613421 NASPP49321 788 aaPredicted RBP16.64■□□□□ 0.25
GGA3-220ENST00000613421 WAPLQ7Z5K2 1190 aa16.64■□□□□ 0.25
GGA3-220ENST00000613421 SSH1Q8WYL5 1049 aa16.64■□□□□ 0.25
GGA3-220ENST00000613421 SYTL4Q96C24 671 aaPredicted RBP16.64■□□□□ 0.25
GGA3-220ENST00000613421 MSH5O43196 834 aa16.63■□□□□ 0.25
GGA3-220ENST00000613421 WDR62O43379 1518 aa16.63■□□□□ 0.25
GGA3-220ENST00000613421 SKAP1Q86WV1 359 aa16.63■□□□□ 0.25
GGA3-220ENST00000613421 DHX29Q7Z478 1369 aaKnown RBP16.63■□□□□ 0.25
GGA3-220ENST00000613421 K7ELQ4 463 aaPredicted RBP16.63■□□□□ 0.25
GGA3-220ENST00000613421 ERC1Q8IUD2 1116 aa16.63■□□□□ 0.25
GGA3-220ENST00000613421 SRCIN1Q9C0H9 1055 aa16.63■□□□□ 0.25
GGA3-220ENST00000613421 KIAA0556O60303 1618 aa16.62■□□□□ 0.25
GGA3-220ENST00000613421 ADAMTS12P58397 1594 aa16.62■□□□□ 0.25
GGA3-220ENST00000613421 CLSTN1O94985 981 aa16.62■□□□□ 0.25
GGA3-220ENST00000613421 THUMPD2Q9BTF0 503 aaKnown RBP16.62■□□□□ 0.25
GGA3-220ENST00000613421 MBD3O95983 291 aa16.62■□□□□ 0.25
GGA3-220ENST00000613421 ALDH1L2Q3SY69 923 aa16.62■□□□□ 0.25
GGA3-220ENST00000613421 CAVIN1Q6NZI2 390 aaKnown RBP16.62■□□□□ 0.25
GGA3-220ENST00000613421 RPAP2Q8IXW5 612 aaPredicted RBP16.62■□□□□ 0.25
GGA3-220ENST00000613421 C14orf93Q9H972 538 aaKnown RBP16.61■□□□□ 0.25
GGA3-220ENST00000613421 NSD2O96028 1365 aa16.61■□□□□ 0.25
GGA3-220ENST00000613421 PRAG1Q86YV5 1406 aa16.61■□□□□ 0.25
GGA3-220ENST00000613421 DUOX2Q9NRD8 1548 aa16.61■□□□□ 0.25
GGA3-220ENST00000613421 ZNF530Q6P9A1 599 aaPredicted RBP16.61■□□□□ 0.25
GGA3-220ENST00000613421 G3V3G9 751 aa16.61■□□□□ 0.25
GGA3-220ENST00000613421 HIP1O00291 1037 aa16.61■□□□□ 0.25
GGA3-220ENST00000613421 IDI1Q13907 227 aa16.61■□□□□ 0.25
GGA3-220ENST00000613421 DCAF8Q5TAQ9 597 aa16.61■□□□□ 0.25
GGA3-220ENST00000613421 FAM43AQ8N2R8 423 aa16.61■□□□□ 0.25
GGA3-220ENST00000613421 IFT57Q9NWB7 429 aa16.61■□□□□ 0.25
GGA3-220ENST00000613421 NUP160Q12769 1436 aa16.6■□□□□ 0.25
GGA3-220ENST00000613421 SYCP2Q9BX26 1530 aa16.6■□□□□ 0.25
GGA3-220ENST00000613421 SASS6Q6UVJ0 657 aa16.6■□□□□ 0.25
GGA3-220ENST00000613421 CWC22Q9HCG8 908 aaKnown RBP16.6■□□□□ 0.25
GGA3-220ENST00000613421 TPD52L1Q16890 204 aaPredicted RBP16.59■□□□□ 0.25
GGA3-220ENST00000613421 PROSER2Q86WR7 435 aaPredicted RBP16.59■□□□□ 0.25
GGA3-220ENST00000613421 WASHC4Q2M389 1173 aa16.59■□□□□ 0.25
GGA3-220ENST00000613421 BRPF3Q9ULD4 1205 aa16.59■□□□□ 0.25
GGA3-220ENST00000613421 KDM5BQ9UGL1 1544 aa16.59■□□□□ 0.25
GGA3-220ENST00000613421 PRPF40AO75400 957 aaKnown RBP16.59■□□□□ 0.25
GGA3-220ENST00000613421 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.59■□□□□ 0.25
GGA3-220ENST00000613421 RALYLQ86SE5 291 aaKnown RBP16.59■□□□□ 0.25
GGA3-220ENST00000613421 PLCH2O75038 1416 aa16.59■□□□□ 0.25
GGA3-220ENST00000613421 CCDC73Q6ZRK6 1079 aa16.59■□□□□ 0.25
GGA3-220ENST00000613421 NFXL1Q6ZNB6 911 aa16.58■□□□□ 0.25
GGA3-220ENST00000613421 FOSBP53539 338 aa16.58■□□□□ 0.24
GGA3-220ENST00000613421 TPM3P06753 285 aa16.58■□□□□ 0.24
GGA3-220ENST00000613421 TATP17735 454 aaPredicted RBP16.58■□□□□ 0.24
GGA3-220ENST00000613421 NME9Q86XW9 330 aa16.58■□□□□ 0.24
GGA3-220ENST00000613421 PARD3Q8TEW0 1356 aa16.57■□□□□ 0.24
GGA3-220ENST00000613421 RNF214Q8ND24 703 aa16.57■□□□□ 0.24
GGA3-220ENST00000613421 CIZ1Q9ULV3 898 aaPredicted RBP16.57■□□□□ 0.24
GGA3-220ENST00000613421 DNAJC2Q99543 621 aaKnown RBP16.56■□□□□ 0.24
GGA3-220ENST00000613421 CCDC27Q2M243 656 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms