RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 NEXNQ0ZGT2 675 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 ANKRD18AQ8IVF6 992 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 WDR66Q8TBY9 1149 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 CADPSQ9ULU8 1353 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 CCDC172P0C7W6 258 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 NOLC1Q14978 699 aaKnown RBP eCLIP5.89□□□□□ -1.474e-7■■■■■ 35.6
VPS13D-213ENST00000613099 GTF2E1P29083 439 aaPredicted RBP5.89□□□□□ -1.47
VPS13D-213ENST00000613099 MKRN1Q9UHC7 482 aaKnown RBP5.89□□□□□ -1.47
VPS13D-213ENST00000613099 ZKSCAN5Q9Y2L8 839 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 ZBTB12Q9Y330 459 aaPredicted RBP5.89□□□□□ -1.47
VPS13D-213ENST00000613099 KIF21BO75037 1637 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 PRKRIP1Q9H875 184 aaPredicted RBP5.89□□□□□ -1.47
VPS13D-213ENST00000613099 DNMBPQ6XZF7 1577 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 CAVIN2O95810 425 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 CFAP43Q8NDM7 1665 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 RSRC1Q96IZ7 334 aaKnown RBP5.88□□□□□ -1.47
VPS13D-213ENST00000613099 AP1ARQ63HQ0 302 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 AQRO60306 1485 aaKnown RBP eCLIP5.88□□□□□ -1.471e-6■■■■■ 28.9
VPS13D-213ENST00000613099 LMAN1P49257 510 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 JAKMIP3Q5VZ66 844 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 FANCD2Q9BXW9 1451 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 DRC1Q96MC2 740 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.88□□□□□ -1.47
VPS13D-213ENST00000613099 A6NNZ2 444 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 IPO7O95373 1038 aaKnown RBP5.88□□□□□ -1.47
VPS13D-213ENST00000613099 TUBB8Q3ZCM7 444 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 LRRCC1Q9C099 1032 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 CENPHQ9H3R5 247 aa5.88□□□□□ -1.47
VPS13D-213ENST00000613099 CEP83Q9Y592 693 aa5.87□□□□□ -1.47
VPS13D-213ENST00000613099 IQCEQ6IPM2 695 aa5.87□□□□□ -1.47
VPS13D-213ENST00000613099 PTPN14Q15678 1187 aa5.87□□□□□ -1.47
VPS13D-213ENST00000613099 LRRFIP2Q9Y608 721 aaKnown RBP5.87□□□□□ -1.47
VPS13D-213ENST00000613099 NPHP1O15259 732 aa5.87□□□□□ -1.47
VPS13D-213ENST00000613099 ZNF397Q8NF99 534 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-213ENST00000613099 MAP9Q49MG5 647 aa5.87□□□□□ -1.47
VPS13D-213ENST00000613099 BIVM-ERCC5R4GMW8 1640 aa5.87□□□□□ -1.47
VPS13D-213ENST00000613099 CCDC146Q8IYE0 955 aa5.87□□□□□ -1.47
VPS13D-213ENST00000613099 RNF168Q8IYW5 571 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-213ENST00000613099 TUBBP07437 444 aa5.87□□□□□ -1.47
VPS13D-213ENST00000613099 TAOK2Q9UL54 1235 aa5.87□□□□□ -1.47
VPS13D-213ENST00000613099 SRRTQ9BXP5 876 aaKnown RBP5.87□□□□□ -1.47
VPS13D-213ENST00000613099 YY1AP1Q9H869 796 aa5.87□□□□□ -1.47
VPS13D-213ENST00000613099 DBN1Q16643 649 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 DCAF11Q8TEB1 546 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 ESF1Q9H501 851 aaKnown RBP5.86□□□□□ -1.47
VPS13D-213ENST00000613099 CCNB3Q8WWL7 1395 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 ITPRIPQ8IWB1 547 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 ERC1Q8IUD2 1116 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 CARD11Q9BXL7 1154 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 SNAPC4Q5SXM2 1469 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 TACO1Q9BSH4 297 aaKnown RBP5.86□□□□□ -1.47
VPS13D-213ENST00000613099 SH2D4BQ5SQS7 431 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 ICE2Q659A1 982 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 KIF3CO14782 793 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 B4GALNT4Q76KP1 1039 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 CHIC2Q9UKJ5 165 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 HOOK1Q9UJC3 728 aaKnown RBP5.86□□□□□ -1.47
VPS13D-213ENST00000613099 FOXD4L5Q5VV16 416 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-213ENST00000613099 FOXD4L4Q8WXT5 416 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-213ENST00000613099 AKAP17AQ02040 695 aaKnown RBP5.86□□□□□ -1.47
VPS13D-213ENST00000613099 KLHL40Q2TBA0 621 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 ARFGAP3Q9NP61 516 aa5.86□□□□□ -1.47
VPS13D-213ENST00000613099 NUCKS1Q9H1E3 243 aaKnown RBP5.85□□□□□ -1.47
VPS13D-213ENST00000613099 MIA2Q96PC5 1412 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 EBAG9O00559 213 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 ZNF500O60304 480 aaPredicted RBP5.85□□□□□ -1.47
VPS13D-213ENST00000613099 NCAPGQ9BPX3 1015 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 NEBLO76041 1014 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 NAP1L1P55209 391 aaKnown RBP5.85□□□□□ -1.47
VPS13D-213ENST00000613099 MAGI1Q96QZ7 1491 aaPredicted RBP5.85□□□□□ -1.47
VPS13D-213ENST00000613099 LOC102724159A0A0B4J2E5 919 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 PWP2Q15269 919 aaKnown RBP5.85□□□□□ -1.47
VPS13D-213ENST00000613099 ZNHIT6Q9NWK9 470 aaKnown RBP5.85□□□□□ -1.47
VPS13D-213ENST00000613099 CASQ1P31415 396 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 CCDC38Q502W7 563 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 C10orf67Q8IYJ2 551 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 KIF7Q2M1P5 1343 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 SMTNL1A8MU46 457 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 EIF5P55010 431 aaKnown RBP5.85□□□□□ -1.47
VPS13D-213ENST00000613099 TMED8Q6PL24 325 aaPredicted RBP5.85□□□□□ -1.47
VPS13D-213ENST00000613099 CCDC102AQ96A19 550 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 WDR7Q9Y4E6 1490 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 CLNS1AP54105 237 aaKnown RBP5.85□□□□□ -1.47
VPS13D-213ENST00000613099 SMC2O95347 1197 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 POTEDQ86YR6 584 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 JRKLQ9Y4A0 524 aa5.85□□□□□ -1.47
VPS13D-213ENST00000613099 SATB1Q01826 763 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 DNAJC21Q5F1R6 531 aaKnown RBP5.84□□□□□ -1.47
VPS13D-213ENST00000613099 ZNF428Q96B54 188 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 PLEKHD1A6NEE1 506 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 PLIN1O60240 522 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 ZKSCAN8Q15776 578 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-213ENST00000613099 NBPF6Q5VWK0 638 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 NBPF5PQ86XG9 351 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-213ENST00000613099 NBPF4Q96M43 638 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 SH3BGRP55822 239 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-213ENST00000613099 NUP133Q8WUM0 1156 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 SPC24Q8NBT2 197 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-213ENST00000613099 NAA25Q14CX7 972 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 258.7 ms