RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 CCDC50Q8IVM0 306 aa10.38□□□□□ -0.75
TTC28-208ENST00000612946 SARNPP82979 210 aaKnown RBP10.38□□□□□ -0.75
TTC28-208ENST00000612946 SPECC1LQ69YQ0 1117 aa10.38□□□□□ -0.75
TTC28-208ENST00000612946 MPHOSPH9Q99550 1183 aa10.38□□□□□ -0.75
TTC28-208ENST00000612946 PLCD4Q9BRC7 762 aa10.38□□□□□ -0.75
TTC28-208ENST00000612946 CCDC102AQ96A19 550 aa10.38□□□□□ -0.75
TTC28-208ENST00000612946 RASSF4Q9H2L5 321 aa10.38□□□□□ -0.75
TTC28-208ENST00000612946 TTC31Q49AM3 519 aaPredicted RBP10.38□□□□□ -0.75
TTC28-208ENST00000612946 NCBP3Q53F19 620 aaKnown RBP10.38□□□□□ -0.75
TTC28-208ENST00000612946 FAM114A1Q8IWE2 563 aa10.38□□□□□ -0.75
TTC28-208ENST00000612946 FYB1O15117 783 aa10.38□□□□□ -0.75
TTC28-208ENST00000612946 NAP1L1P55209 391 aaKnown RBP10.38□□□□□ -0.75
TTC28-208ENST00000612946 SFPQP23246 707 aaKnown RBP eCLIP10.38□□□□□ -0.75
TTC28-208ENST00000612946 TNMDQ9H2S6 317 aa10.38□□□□□ -0.75
TTC28-208ENST00000612946 IMMTQ16891 758 aaKnown RBP10.37□□□□□ -0.75
TTC28-208ENST00000612946 CCDC183Q5T5S1 534 aa10.37□□□□□ -0.75
TTC28-208ENST00000612946 GPATCH11Q8N954 259 aa10.37□□□□□ -0.75
TTC28-208ENST00000612946 BRMS1Q9HCU9 246 aa10.37□□□□□ -0.75
TTC28-208ENST00000612946 SMARCA2P51531 1590 aa10.37□□□□□ -0.75
TTC28-208ENST00000612946 KRT85P78386 507 aa10.37□□□□□ -0.75
TTC28-208ENST00000612946 MEX3CQ5U5Q3 659 aaKnown RBP10.37□□□□□ -0.75
TTC28-208ENST00000612946 TMX4Q9H1E5 349 aaPredicted RBP10.37□□□□□ -0.75
TTC28-208ENST00000612946 ANO2Q9NQ90 1003 aa10.37□□□□□ -0.75
TTC28-208ENST00000612946 VPS37CA5D8V6 355 aaPredicted RBP10.37□□□□□ -0.75
TTC28-208ENST00000612946 SEPT6Q14141 434 aa10.37□□□□□ -0.75
TTC28-208ENST00000612946 CFAP45Q9UL16 551 aa10.37□□□□□ -0.75
TTC28-208ENST00000612946 GORABQ5T7V8 394 aa10.37□□□□□ -0.75
TTC28-208ENST00000612946 FOXD4L5Q5VV16 416 aaPredicted RBP10.37□□□□□ -0.75
TTC28-208ENST00000612946 FOXD4L4Q8WXT5 416 aaPredicted RBP10.37□□□□□ -0.75
TTC28-208ENST00000612946 GCC1Q96CN9 775 aa10.37□□□□□ -0.75
TTC28-208ENST00000612946 APBB1O00213 710 aa10.36□□□□□ -0.75
TTC28-208ENST00000612946 CTAGE5O15320 804 aa10.36□□□□□ -0.75
TTC28-208ENST00000612946 STIM1Q13586 685 aa10.36□□□□□ -0.75
TTC28-208ENST00000612946 ODF2Q5BJF6 829 aa10.36□□□□□ -0.75
TTC28-208ENST00000612946 ZHX1Q9UKY1 873 aaPredicted RBP10.36□□□□□ -0.75
TTC28-208ENST00000612946 EPS15P42566 896 aa10.36□□□□□ -0.75
TTC28-208ENST00000612946 SMC1AQ14683 1233 aaKnown RBP10.36□□□□□ -0.75
TTC28-208ENST00000612946 RNF214Q8ND24 703 aa10.36□□□□□ -0.75
TTC28-208ENST00000612946 EHBP1Q8NDI1 1231 aa10.36□□□□□ -0.75
TTC28-208ENST00000612946 PAK3O75914 559 aaPredicted RBP10.35□□□□□ -0.75
TTC28-208ENST00000612946 XBP1P17861 261 aa10.35□□□□□ -0.75
TTC28-208ENST00000612946 A0A1B0GUL7 405 aa10.35□□□□□ -0.75
TTC28-208ENST00000612946 HSPA4P34932 840 aa10.35□□□□□ -0.75
TTC28-208ENST00000612946 SEPT7Q16181 437 aaKnown RBP10.35□□□□□ -0.75
TTC28-208ENST00000612946 OGFRQ9NZT2 677 aa10.35□□□□□ -0.75
TTC28-208ENST00000612946 MAGEC2Q9UBF1 373 aaPredicted RBP10.35□□□□□ -0.75
TTC28-208ENST00000612946 NOL8Q76FK4 1167 aaKnown RBP10.35□□□□□ -0.75
TTC28-208ENST00000612946 RSRC1Q96IZ7 334 aaKnown RBP10.35□□□□□ -0.75
TTC28-208ENST00000612946 PDILTQ8N807 584 aa10.35□□□□□ -0.75
TTC28-208ENST00000612946 MPHOSPH10O00566 681 aaKnown RBP10.35□□□□□ -0.75
TTC28-208ENST00000612946 CCDC181Q5TID7 509 aa10.35□□□□□ -0.75
TTC28-208ENST00000612946 CFAP57Q96MR6 1250 aa10.35□□□□□ -0.75
TTC28-208ENST00000612946 OFD1O75665 1012 aa10.34□□□□□ -0.75
TTC28-208ENST00000612946 SH2D4BQ5SQS7 431 aa10.34□□□□□ -0.75
TTC28-208ENST00000612946 PRPF40AO75400 957 aaKnown RBP10.34□□□□□ -0.75
TTC28-208ENST00000612946 CBX1P83916 185 aa10.34□□□□□ -0.75
TTC28-208ENST00000612946 ENOX2Q16206 610 aaKnown RBP10.34□□□□□ -0.75
TTC28-208ENST00000612946 DNAJC21Q5F1R6 531 aaKnown RBP10.34□□□□□ -0.75
TTC28-208ENST00000612946 CENPHQ9H3R5 247 aa10.34□□□□□ -0.75
TTC28-208ENST00000612946 MAP3K11Q16584 847 aa10.34□□□□□ -0.75
TTC28-208ENST00000612946 ANKS4BQ8N8V4 417 aa10.34□□□□□ -0.75
TTC28-208ENST00000612946 TRDNQ13061 729 aa10.34□□□□□ -0.75
TTC28-208ENST00000612946 KIF5CO60282 957 aa10.33□□□□□ -0.76
TTC28-208ENST00000612946 BRD2P25440 801 aaKnown RBP10.33□□□□□ -0.76
TTC28-208ENST00000612946 DDX12PQ92771 950 aa10.33□□□□□ -0.76
TTC28-208ENST00000612946 SENP3Q9H4L4 574 aaPredicted RBP10.33□□□□□ -0.76
TTC28-208ENST00000612946 CCDC175P0C221 793 aa10.33□□□□□ -0.76
TTC28-208ENST00000612946 ZSCAN31Q96LW9 406 aaPredicted RBP10.33□□□□□ -0.76
TTC28-208ENST00000612946 MYCBPQ99417 103 aaPredicted RBP10.33□□□□□ -0.76
TTC28-208ENST00000612946 RILPL2Q969X0 211 aa10.33□□□□□ -0.76
TTC28-208ENST00000612946 ERICH3Q5RHP9 1530 aa10.33□□□□□ -0.76
TTC28-208ENST00000612946 HSP90AB2PQ58FF8 381 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 FMNL3Q8IVF7 1028 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 CCDC150Q8NCX0 1101 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 POTEDQ86YR6 584 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 GCOM1H8Y6P7 765 aaPredicted RBP10.32□□□□□ -0.76
TTC28-208ENST00000612946 MYZAPP0CAP1 466 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 SUPT6HQ7KZ85 1726 aaKnown RBP10.32□□□□□ -0.76
TTC28-208ENST00000612946 GBP6Q6ZN66 633 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 SMARCC1Q92922 1105 aaPredicted RBP10.32□□□□□ -0.76
TTC28-208ENST00000612946 SRCIN1Q9C0H9 1055 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 NUP62CLQ9H1M0 184 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 PKD2Q13563 968 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 ARHGAP29Q52LW3 1261 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 PPM1EQ8WY54 764 aa10.32□□□□□ -0.76
TTC28-208ENST00000612946 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.32□□□□□ -0.76
TTC28-208ENST00000612946 CARMIL1Q5VZK9 1371 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 NSRP1Q9H0G5 558 aaKnown RBP10.31□□□□□ -0.76
TTC28-208ENST00000612946 RRBP1Q9P2E9 1410 aaKnown RBP10.31□□□□□ -0.76
TTC28-208ENST00000612946 CCDC38Q502W7 563 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 KIF3CO14782 793 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 NUP155O75694 1391 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 COG6Q9Y2V7 657 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 ABCC8Q09428 1581 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 SRPK2P78362 688 aaKnown RBP10.31□□□□□ -0.76
TTC28-208ENST00000612946 NUTM1Q86Y26 1132 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 FMNL2Q96PY5 1086 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 TAOK2Q9UL54 1235 aa10.31□□□□□ -0.76
TTC28-208ENST00000612946 GTF2F1P35269 517 aaKnown RBP eCLIP10.31□□□□□ -0.76
TTC28-208ENST00000612946 C6orf163Q5TEZ5 329 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms