RNA–Protein interactions for RNA: ENST00000606752.1

USP6NL-204, Transcript of USP6 N-terminal like, humanhuman

TSL 1 (best)

Gene USP6NL, Length 1,823 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-204ENST00000606752 COG3Q96JB2 828 aa28.74■■■□□ 2.19
USP6NL-204ENST00000606752 SSH2Q76I76 1423 aa28.72■■■□□ 2.19
USP6NL-204ENST00000606752 SENP3-EIF4A1A0A087X0R7 540 aa28.72■■■□□ 2.19
USP6NL-204ENST00000606752 ZRANB1Q9UGI0 708 aa28.71■■■□□ 2.19
USP6NL-204ENST00000606752 RGPD8O14715 1765 aaPredicted RBP28.71■■■□□ 2.19
USP6NL-204ENST00000606752 TTC21AQ8NDW8 1320 aa28.69■■■□□ 2.18
USP6NL-204ENST00000606752 NRKQ7Z2Y5 1582 aa28.69■■■□□ 2.18
USP6NL-204ENST00000606752 AATKQ6ZMQ8 1374 aa28.67■■■□□ 2.18
USP6NL-204ENST00000606752 C19orf44Q9H6X5 657 aa28.67■■■□□ 2.18
USP6NL-204ENST00000606752 POLKQ9UBT6 870 aa28.67■■■□□ 2.18
USP6NL-204ENST00000606752 PHF8Q9UPP1 1060 aa28.67■■■□□ 2.18
USP6NL-204ENST00000606752 PNPLA6Q8IY17 1366 aa28.66■■■□□ 2.18
USP6NL-204ENST00000606752 SALL2Q9Y467 1007 aaPredicted RBP28.66■■■□□ 2.18
USP6NL-204ENST00000606752 NCOA3Q9Y6Q9 1424 aa28.65■■■□□ 2.18
USP6NL-204ENST00000606752 SHPRHQ149N8 1683 aa28.64■■■□□ 2.17
USP6NL-204ENST00000606752 NUDCQ9Y266 331 aa28.64■■■□□ 2.17
USP6NL-204ENST00000606752 STRCQ7RTU9 1775 aa28.63■■■□□ 2.17
USP6NL-204ENST00000606752 FBLN1P23142 703 aa28.63■■■□□ 2.17
USP6NL-204ENST00000606752 PDE3BQ13370 1112 aa28.63■■■□□ 2.17
USP6NL-204ENST00000606752 ESCO1Q5FWF5 840 aa28.62■■■□□ 2.17
USP6NL-204ENST00000606752 CCDC146Q8IYE0 955 aa28.62■■■□□ 2.17
USP6NL-204ENST00000606752 TMEM94Q12767 1356 aa28.62■■■□□ 2.17
USP6NL-204ENST00000606752 OVOS2A0A0J9YW53 1432 aa28.61■■■□□ 2.17
USP6NL-204ENST00000606752 OVOS2Q6IE36 1432 aa28.61■■■□□ 2.17
USP6NL-204ENST00000606752 SMG6Q86US8 1419 aaKnown RBP28.61■■■□□ 2.17
USP6NL-204ENST00000606752 COL3A1P02461 1466 aaPredicted RBP28.61■■■□□ 2.17
USP6NL-204ENST00000606752 PPM1GO15355 546 aaPredicted RBP28.59■■■□□ 2.17
USP6NL-204ENST00000606752 DIAPH1O60610 1272 aaKnown RBP28.59■■■□□ 2.17
USP6NL-204ENST00000606752 STRCP1A6NGW2 1772 aa28.58■■■□□ 2.17
USP6NL-204ENST00000606752 USP31Q70CQ4 1352 aa28.58■■■□□ 2.17
USP6NL-204ENST00000606752 U2AF1L5P0DN76 240 aaPredicted RBP28.58■■■□□ 2.17
USP6NL-204ENST00000606752 U2AF1Q01081 240 aaKnown RBP eCLIP28.58■■■□□ 2.17
USP6NL-204ENST00000606752 APAF1O14727 1248 aa28.57■■■□□ 2.16
USP6NL-204ENST00000606752 NGEFQ8N5V2 710 aa28.57■■■□□ 2.16
USP6NL-204ENST00000606752 EMILIN1Q9Y6C2 1016 aa28.57■■■□□ 2.16
USP6NL-204ENST00000606752 RUNDC1Q96C34 613 aa28.56■■■□□ 2.16
USP6NL-204ENST00000606752 ATF3P18847 181 aa28.55■■■□□ 2.16
USP6NL-204ENST00000606752 MAP2P11137 1827 aaKnown RBP28.55■■■□□ 2.16
USP6NL-204ENST00000606752 ORAI2Q96SN7 254 aa28.55■■■□□ 2.16
USP6NL-204ENST00000606752 DCCP43146 1447 aa28.54■■■□□ 2.16
USP6NL-204ENST00000606752 RRS1Q15050 365 aaKnown RBP28.54■■■□□ 2.16
USP6NL-204ENST00000606752 U2SURPO15042 1029 aaKnown RBP28.53■■■□□ 2.16
USP6NL-204ENST00000606752 PSME1Q06323 249 aa28.53■■■□□ 2.16
USP6NL-204ENST00000606752 CDK12Q9NYV4 1490 aaPredicted RBP28.52■■■□□ 2.16
USP6NL-204ENST00000606752 SUPT16HQ9Y5B9 1047 aaKnown RBP28.52■■■□□ 2.16
USP6NL-204ENST00000606752 C1orf167Q5SNV9 1468 aa28.52■■■□□ 2.16
USP6NL-204ENST00000606752 PAK3O75914 559 aaPredicted RBP28.51■■■□□ 2.15
USP6NL-204ENST00000606752 NLRP6P59044 892 aa28.51■■■□□ 2.15
USP6NL-204ENST00000606752 ZNF521Q96K83 1311 aa28.5■■■□□ 2.15
USP6NL-204ENST00000606752 CADPS2Q86UW7 1296 aa28.5■■■□□ 2.15
USP6NL-204ENST00000606752 ABTB2Q8N961 1025 aa28.5■■■□□ 2.15
USP6NL-204ENST00000606752 DMRT2Q9Y5R5 561 aa28.49■■■□□ 2.15
USP6NL-204ENST00000606752 CDCA7LQ96GN5 454 aa28.48■■■□□ 2.15
USP6NL-204ENST00000606752 PIK3C2AO00443 1686 aa28.47■■■□□ 2.15
USP6NL-204ENST00000606752 MSH6P52701 1360 aa28.47■■■□□ 2.15
USP6NL-204ENST00000606752 FOXO3O43524 673 aa28.47■■■□□ 2.15
USP6NL-204ENST00000606752 ZNF335Q9H4Z2 1342 aaPredicted RBP28.46■■■□□ 2.15
USP6NL-204ENST00000606752 IL13P35225 146 aa28.46■■■□□ 2.15
USP6NL-204ENST00000606752 TCP11L2Q8N4U5 519 aa28.46■■■□□ 2.15
USP6NL-204ENST00000606752 PNNQ9H307 717 aaKnown RBP28.46■■■□□ 2.15
USP6NL-204ENST00000606752 MST1RQ04912 1400 aa28.46■■■□□ 2.15
USP6NL-204ENST00000606752 NEFLP07196 543 aa28.46■■■□□ 2.15
USP6NL-204ENST00000606752 NCBP3Q53F19 620 aaKnown RBP28.44■■■□□ 2.14
USP6NL-204ENST00000606752 PLEKHF1Q96S99 279 aa28.44■■■□□ 2.14
USP6NL-204ENST00000606752 FCHSD2O94868 740 aa28.43■■■□□ 2.14
USP6NL-204ENST00000606752 GOLGA2Q08379 1002 aa28.43■■■□□ 2.14
USP6NL-204ENST00000606752 NUTM2GQ5VZR2 741 aa28.43■■■□□ 2.14
USP6NL-204ENST00000606752 LRRC7Q96NW7 1537 aa28.42■■■□□ 2.14
USP6NL-204ENST00000606752 SOX12O15370 315 aa28.42■■■□□ 2.14
USP6NL-204ENST00000606752 IQSEC2Q5JU85 1478 aa28.41■■■□□ 2.14
USP6NL-204ENST00000606752 MAP3K19Q56UN5 1328 aa28.4■■■□□ 2.14
USP6NL-204ENST00000606752 KIF1AQ12756 1690 aa28.39■■■□□ 2.14
USP6NL-204ENST00000606752 USP54Q70EL1 1684 aa28.39■■■□□ 2.14
USP6NL-204ENST00000606752 KRT28Q7Z3Y7 464 aa28.39■■■□□ 2.14
USP6NL-204ENST00000606752 FKBP8Q14318 412 aa28.39■■■□□ 2.13
USP6NL-204ENST00000606752 WWC1Q8IX03 1113 aa28.39■■■□□ 2.13
USP6NL-204ENST00000606752 CCDC27Q2M243 656 aa28.38■■■□□ 2.13
USP6NL-204ENST00000606752 NEUROD2Q15784 382 aa28.37■■■□□ 2.13
USP6NL-204ENST00000606752 PHF23Q9BUL5 403 aaPredicted RBP28.37■■■□□ 2.13
USP6NL-204ENST00000606752 RSPH6AQ9H0K4 717 aa28.37■■■□□ 2.13
USP6NL-204ENST00000606752 RRP7AQ9Y3A4 280 aaKnown RBP28.37■■■□□ 2.13
USP6NL-204ENST00000606752 MAPK8IP3Q9UPT6 1336 aa28.37■■■□□ 2.13
USP6NL-204ENST00000606752 XPCQ01831 940 aaPredicted RBP28.36■■■□□ 2.13
USP6NL-204ENST00000606752 SBNO1A3KN83 1393 aa28.36■■■□□ 2.13
USP6NL-204ENST00000606752 SLFN5Q08AF3 891 aa28.36■■■□□ 2.13
USP6NL-204ENST00000606752 EIF4A2Q14240 407 aaKnown RBP28.36■■■□□ 2.13
USP6NL-204ENST00000606752 HSP90AB2PQ58FF8 381 aa28.36■■■□□ 2.13
USP6NL-204ENST00000606752 AMPHP49418 695 aa28.34■■■□□ 2.13
USP6NL-204ENST00000606752 XIRP1Q702N8 1843 aaKnown RBP28.34■■■□□ 2.13
USP6NL-204ENST00000606752 FLT4P35916 1363 aa28.34■■■□□ 2.13
USP6NL-204ENST00000606752 DUSP27Q5VZP5 1158 aa28.34■■■□□ 2.13
USP6NL-204ENST00000606752 KIF24Q5T7B8 1368 aa28.34■■■□□ 2.13
USP6NL-204ENST00000606752 PRKAR2BP31323 418 aa28.33■■■□□ 2.13
USP6NL-204ENST00000606752 TRMT2AQ8IZ69 625 aaKnown RBP28.33■■■□□ 2.13
USP6NL-204ENST00000606752 MARF1Q9Y4F3 1742 aaKnown RBP28.33■■■□□ 2.13
USP6NL-204ENST00000606752 E9PSI1 815 aa28.32■■■□□ 2.12
USP6NL-204ENST00000606752 HMOX1P09601 288 aa28.32■■■□□ 2.12
USP6NL-204ENST00000606752 TMPOP42166 694 aaKnown RBP28.32■■■□□ 2.12
USP6NL-204ENST00000606752 PEAK1Q9H792 1746 aa28.32■■■□□ 2.12
USP6NL-204ENST00000606752 NEFMP07197 916 aa28.32■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms