RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 CRYBG1Q9Y4K1 1723 aa23.73■■□□□ 1.39
TRIM28-215ENST00000601150 HAP1P54257 671 aaPredicted RBP23.72■■□□□ 1.39
TRIM28-215ENST00000601150 POTEAQ6S8J7 498 aa23.72■■□□□ 1.39
TRIM28-215ENST00000601150 NGLY1Q96IV0 654 aa23.72■■□□□ 1.39
TRIM28-215ENST00000601150 BRD4O60885 1362 aaPredicted RBP23.71■■□□□ 1.39
TRIM28-215ENST00000601150 CABLES1Q8TDN4 633 aa23.71■■□□□ 1.39
TRIM28-215ENST00000601150 PLEKHG5O94827 1062 aa23.7■■□□□ 1.38
TRIM28-215ENST00000601150 USP6P35125 1406 aa23.69■■□□□ 1.38
TRIM28-215ENST00000601150 PUS7Q96PZ0 661 aaKnown RBP23.69■■□□□ 1.38
TRIM28-215ENST00000601150 PHRF1Q9P1Y6 1649 aaKnown RBP23.67■■□□□ 1.38
TRIM28-215ENST00000601150 MON2Q7Z3U7 1717 aa23.67■■□□□ 1.38
TRIM28-215ENST00000601150 ZNF692Q9BU19 519 aaPredicted RBP23.66■■□□□ 1.38
TRIM28-215ENST00000601150 FNBP4Q8N3X1 1017 aaPredicted RBP23.65■■□□□ 1.38
TRIM28-215ENST00000601150 CPSF1Q10570 1443 aaKnown RBP23.65■■□□□ 1.38
TRIM28-215ENST00000601150 TMF1P82094 1093 aa23.64■■□□□ 1.37
TRIM28-215ENST00000601150 NRKQ7Z2Y5 1582 aa23.64■■□□□ 1.37
TRIM28-215ENST00000601150 PLCH1Q4KWH8 1693 aa23.64■■□□□ 1.37
TRIM28-215ENST00000601150 SSH2Q76I76 1423 aa23.63■■□□□ 1.37
TRIM28-215ENST00000601150 ABTB2Q8N961 1025 aa23.63■■□□□ 1.37
TRIM28-215ENST00000601150 TMC1Q8TDI8 760 aa23.63■■□□□ 1.37
TRIM28-215ENST00000601150 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.63■■□□□ 1.37
TRIM28-215ENST00000601150 USP21Q9UK80 565 aa23.63■■□□□ 1.37
TRIM28-215ENST00000601150 NWD2Q9ULI1 1742 aa23.62■■□□□ 1.37
TRIM28-215ENST00000601150 NUTM2GQ5VZR2 741 aa23.62■■□□□ 1.37
TRIM28-215ENST00000601150 KTN1Q86UP2 1357 aaKnown RBP23.62■■□□□ 1.37
TRIM28-215ENST00000601150 PIK3C2AO00443 1686 aa23.61■■□□□ 1.37
TRIM28-215ENST00000601150 NINLQ9Y2I6 1382 aa23.61■■□□□ 1.37
TRIM28-215ENST00000601150 SLIT2O94813 1529 aa23.6■■□□□ 1.37
TRIM28-215ENST00000601150 SLC12A5Q9H2X9 1139 aa23.6■■□□□ 1.37
TRIM28-215ENST00000601150 QTRT2Q9H974 415 aaKnown RBP23.6■■□□□ 1.37
TRIM28-215ENST00000601150 CD163L1Q9NR16 1453 aa23.6■■□□□ 1.37
TRIM28-215ENST00000601150 COL14A1Q05707 1796 aaKnown RBP23.6■■□□□ 1.37
TRIM28-215ENST00000601150 NLRP13Q86W25 1043 aa23.59■■□□□ 1.37
TRIM28-215ENST00000601150 BCL9LQ86UU0 1499 aa23.59■■□□□ 1.37
TRIM28-215ENST00000601150 RXRBP28702 533 aa23.58■■□□□ 1.37
TRIM28-215ENST00000601150 EIF4G2P78344 907 aaKnown RBP eCLIP23.58■■□□□ 1.37
TRIM28-215ENST00000601150 CDCA8Q53HL2 280 aa23.58■■□□□ 1.37
TRIM28-215ENST00000601150 HDGFL2Q7Z4V5 671 aaPredicted RBP23.58■■□□□ 1.37
TRIM28-215ENST00000601150 USP19O94966 1318 aa23.58■■□□□ 1.36
TRIM28-215ENST00000601150 TTC21BQ7Z4L5 1316 aa23.58■■□□□ 1.36
TRIM28-215ENST00000601150 TTC21AQ8NDW8 1320 aa23.58■■□□□ 1.36
TRIM28-215ENST00000601150 TERF2IPQ9NYB0 399 aa23.57■■□□□ 1.36
TRIM28-215ENST00000601150 TRPC5Q9UL62 973 aaPredicted RBP23.57■■□□□ 1.36
TRIM28-215ENST00000601150 ATRNO75882 1429 aa23.56■■□□□ 1.36
TRIM28-215ENST00000601150 FAM83GA6ND36 823 aa23.55■■□□□ 1.36
TRIM28-215ENST00000601150 SOCS7O14512 581 aa23.55■■□□□ 1.36
TRIM28-215ENST00000601150 NLRP6P59044 892 aa23.55■■□□□ 1.36
TRIM28-215ENST00000601150 RBM6P78332 1123 aaKnown RBP23.54■■□□□ 1.36
TRIM28-215ENST00000601150 UNC5CLQ8IV45 518 aa23.54■■□□□ 1.36
TRIM28-215ENST00000601150 A0A1W2PP64 1363 aa23.53■■□□□ 1.36
TRIM28-215ENST00000601150 NRAPQ86VF7 1730 aa23.53■■□□□ 1.36
TRIM28-215ENST00000601150 HSPA5P11021 654 aaKnown RBP23.53■■□□□ 1.36
TRIM28-215ENST00000601150 CDK12Q9NYV4 1490 aaPredicted RBP23.53■■□□□ 1.36
TRIM28-215ENST00000601150 SLIT3O75094 1523 aa23.53■■□□□ 1.36
TRIM28-215ENST00000601150 KIAA0232Q92628 1395 aa23.52■■□□□ 1.36
TRIM28-215ENST00000601150 EDC4Q6P2E9 1401 aaKnown RBP23.52■■□□□ 1.36
TRIM28-215ENST00000601150 PRDM11Q9NQV5 511 aa23.52■■□□□ 1.36
TRIM28-215ENST00000601150 MYOM1P52179 1685 aa23.51■■□□□ 1.35
TRIM28-215ENST00000601150 USP54Q70EL1 1684 aa23.51■■□□□ 1.35
TRIM28-215ENST00000601150 GCP02774 474 aa23.5■■□□□ 1.35
TRIM28-215ENST00000601150 ZC3H6P61129 1189 aaKnown RBP23.5■■□□□ 1.35
TRIM28-215ENST00000601150 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.49■■□□□ 1.35
TRIM28-215ENST00000601150 CPDO75976 1380 aa23.49■■□□□ 1.35
TRIM28-215ENST00000601150 ANKRD36BQ8N2N9 1353 aa23.49■■□□□ 1.35
TRIM28-215ENST00000601150 BTG4Q9NY30 223 aa23.48■■□□□ 1.35
TRIM28-215ENST00000601150 CHRNA2Q15822 529 aa23.46■■□□□ 1.35
TRIM28-215ENST00000601150 USP31Q70CQ4 1352 aa23.46■■□□□ 1.35
TRIM28-215ENST00000601150 GJD4Q96KN9 370 aaPredicted RBP23.46■■□□□ 1.35
TRIM28-215ENST00000601150 LMO7Q8WWI1 1683 aa23.45■■□□□ 1.34
TRIM28-215ENST00000601150 GLI3P10071 1580 aa23.45■■□□□ 1.34
TRIM28-215ENST00000601150 RGS12O14924 1447 aa23.45■■□□□ 1.34
TRIM28-215ENST00000601150 VPS72Q15906 364 aa23.45■■□□□ 1.34
TRIM28-215ENST00000601150 NME9Q86XW9 330 aa23.45■■□□□ 1.34
TRIM28-215ENST00000601150 KCNH5Q8NCM2 988 aa23.44■■□□□ 1.34
TRIM28-215ENST00000601150 ZRANB1Q9UGI0 708 aa23.42■■□□□ 1.34
TRIM28-215ENST00000601150 CCDC9Q9Y3X0 531 aaKnown RBP23.42■■□□□ 1.34
TRIM28-215ENST00000601150 NFAT5O94916 1531 aa23.41■■□□□ 1.34
TRIM28-215ENST00000601150 CAMTA1Q9Y6Y1 1673 aa23.41■■□□□ 1.34
TRIM28-215ENST00000601150 COL18A1P39060 1754 aa23.4■■□□□ 1.34
TRIM28-215ENST00000601150 POLR3GLQ9BT43 218 aa23.4■■□□□ 1.34
TRIM28-215ENST00000601150 KIF20BQ96Q89 1820 aa23.4■■□□□ 1.34
TRIM28-215ENST00000601150 ZBTB7CA1YPR0 619 aa23.39■■□□□ 1.33
TRIM28-215ENST00000601150 AATKQ6ZMQ8 1374 aa23.39■■□□□ 1.33
TRIM28-215ENST00000601150 SOX12O15370 315 aa23.38■■□□□ 1.33
TRIM28-215ENST00000601150 OVOS2A0A0J9YW53 1432 aa23.38■■□□□ 1.33
TRIM28-215ENST00000601150 OVOS2Q6IE36 1432 aa23.38■■□□□ 1.33
TRIM28-215ENST00000601150 LTN1O94822 1766 aa23.37■■□□□ 1.33
TRIM28-215ENST00000601150 STRN4Q9NRL3 753 aa23.37■■□□□ 1.33
TRIM28-215ENST00000601150 RGPD5Q99666 1765 aa23.37■■□□□ 1.33
TRIM28-215ENST00000601150 EVA1CP58658 441 aa23.36■■□□□ 1.33
TRIM28-215ENST00000601150 ARHGEF25Q86VW2 580 aa23.36■■□□□ 1.33
TRIM28-215ENST00000601150 SPATA31A5Q5VU36 1347 aa23.35■■□□□ 1.33
TRIM28-215ENST00000601150 SPATA31A7Q8IWB4 1347 aa23.35■■□□□ 1.33
TRIM28-215ENST00000601150 BRWD3Q6RI45 1802 aa23.34■■□□□ 1.33
TRIM28-215ENST00000601150 COL5A2P05997 1499 aaPredicted RBP23.34■■□□□ 1.33
TRIM28-215ENST00000601150 ABCC6O95255 1503 aa23.33■■□□□ 1.33
TRIM28-215ENST00000601150 C11orf95C9JLR9 678 aaPredicted RBP23.33■■□□□ 1.33
TRIM28-215ENST00000601150 COG3Q96JB2 828 aa23.33■■□□□ 1.33
TRIM28-215ENST00000601150 CARD14Q9BXL6 1004 aa23.33■■□□□ 1.33
TRIM28-215ENST00000601150 NSD3Q9BZ95 1437 aa23.33■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms