RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 TNS3Q68CZ2 1445 aa23.02■■□□□ 1.28
LSM4-206ENST00000600289 CARD11Q9BXL7 1154 aa23.02■■□□□ 1.28
LSM4-206ENST00000600289 NUDT16Q96DE0 195 aaKnown RBP23.01■■□□□ 1.27
LSM4-206ENST00000600289 SPATA31A3Q5VYP0 1347 aa23.01■■□□□ 1.27
LSM4-206ENST00000600289 SF3B2Q13435 895 aaKnown RBP23■■□□□ 1.27
LSM4-206ENST00000600289 KRT28Q7Z3Y7 464 aa23■■□□□ 1.27
LSM4-206ENST00000600289 POLR3AO14802 1390 aaPredicted RBP23■■□□□ 1.27
LSM4-206ENST00000600289 CRYBG1Q9Y4K1 1723 aa22.99■■□□□ 1.27
LSM4-206ENST00000600289 PSME1Q06323 249 aa22.99■■□□□ 1.27
LSM4-206ENST00000600289 PLCH1Q4KWH8 1693 aa22.98■■□□□ 1.27
LSM4-206ENST00000600289 XPCQ01831 940 aaPredicted RBP22.98■■□□□ 1.27
LSM4-206ENST00000600289 PMFBP1Q8TBY8 1022 aa22.98■■□□□ 1.27
LSM4-206ENST00000600289 CCER1Q8TC90 406 aaPredicted RBP22.98■■□□□ 1.27
LSM4-206ENST00000600289 CCDC61Q9Y6R9 512 aa22.98■■□□□ 1.27
LSM4-206ENST00000600289 AKAP12Q02952 1782 aa22.97■■□□□ 1.27
LSM4-206ENST00000600289 EVC2Q86UK5 1308 aa22.97■■□□□ 1.27
LSM4-206ENST00000600289 RGPD1P0DJD0 1748 aa22.96■■□□□ 1.27
LSM4-206ENST00000600289 UNC5CLQ8IV45 518 aa22.96■■□□□ 1.27
LSM4-206ENST00000600289 ARHGEF10O15013 1369 aa22.96■■□□□ 1.27
LSM4-206ENST00000600289 PLEKHG3A1L390 1219 aa22.95■■□□□ 1.26
LSM4-206ENST00000600289 PPIP5K1Q6PFW1 1433 aa22.95■■□□□ 1.26
LSM4-206ENST00000600289 NWD2Q9ULI1 1742 aa22.95■■□□□ 1.26
LSM4-206ENST00000600289 TNS1Q9HBL0 1735 aaKnown RBP22.94■■□□□ 1.26
LSM4-206ENST00000600289 SRPK2P78362 688 aaKnown RBP22.93■■□□□ 1.26
LSM4-206ENST00000600289 SEPT12Q8IYM1 358 aa22.93■■□□□ 1.26
LSM4-206ENST00000600289 YY1P25490 414 aa22.92■■□□□ 1.26
LSM4-206ENST00000600289 NGDNQ8NEJ9 315 aaKnown RBP22.91■■□□□ 1.26
LSM4-206ENST00000600289 CABP2Q9NPB3 220 aa22.91■■□□□ 1.26
LSM4-206ENST00000600289 BRD4O60885 1362 aaPredicted RBP22.9■■□□□ 1.26
LSM4-206ENST00000600289 MON2Q7Z3U7 1717 aa22.9■■□□□ 1.26
LSM4-206ENST00000600289 PHRF1Q9P1Y6 1649 aaKnown RBP22.9■■□□□ 1.26
LSM4-206ENST00000600289 ACEP12821 1306 aa22.89■■□□□ 1.26
LSM4-206ENST00000600289 NRKQ7Z2Y5 1582 aa22.89■■□□□ 1.25
LSM4-206ENST00000600289 BAG6P46379 1132 aa22.88■■□□□ 1.25
LSM4-206ENST00000600289 ONECUT3O60422 494 aaPredicted RBP22.87■■□□□ 1.25
LSM4-206ENST00000600289 USP47Q96K76 1375 aa22.87■■□□□ 1.25
LSM4-206ENST00000600289 SLC24A1O60721 1099 aa22.86■■□□□ 1.25
LSM4-206ENST00000600289 KRT27Q7Z3Y8 459 aa22.86■■□□□ 1.25
LSM4-206ENST00000600289 R3HDM1Q15032 1099 aaKnown RBP22.85■■□□□ 1.25
LSM4-206ENST00000600289 PUS7Q96PZ0 661 aaKnown RBP22.85■■□□□ 1.25
LSM4-206ENST00000600289 NRAPQ86VF7 1730 aa22.85■■□□□ 1.25
LSM4-206ENST00000600289 TESK2Q96S53 571 aa22.84■■□□□ 1.25
LSM4-206ENST00000600289 USP6P35125 1406 aa22.83■■□□□ 1.25
LSM4-206ENST00000600289 VPS72Q15906 364 aa22.83■■□□□ 1.25
LSM4-206ENST00000600289 ST20-MTHFSA0A0A6YYL1 179 aa22.82■■□□□ 1.24
LSM4-206ENST00000600289 CABP1Q9NZU7 370 aa22.82■■□□□ 1.24
LSM4-206ENST00000600289 CPSF1Q10570 1443 aaKnown RBP22.82■■□□□ 1.24
LSM4-206ENST00000600289 SSH2Q76I76 1423 aa22.82■■□□□ 1.24
LSM4-206ENST00000600289 COL14A1Q05707 1796 aaKnown RBP22.81■■□□□ 1.24
LSM4-206ENST00000600289 PIK3C2AO00443 1686 aa22.81■■□□□ 1.24
LSM4-206ENST00000600289 EN1Q05925 392 aaPredicted RBP22.81■■□□□ 1.24
LSM4-206ENST00000600289 DISP2A7MBM2 1401 aa22.81■■□□□ 1.24
LSM4-206ENST00000600289 USP54Q70EL1 1684 aa22.81■■□□□ 1.24
LSM4-206ENST00000600289 CD163L1Q9NR16 1453 aa22.79■■□□□ 1.24
LSM4-206ENST00000600289 LMOD2Q6P5Q4 547 aa22.78■■□□□ 1.24
LSM4-206ENST00000600289 RREB1Q92766 1687 aa22.77■■□□□ 1.24
LSM4-206ENST00000600289 PAK3O75914 559 aaPredicted RBP22.77■■□□□ 1.24
LSM4-206ENST00000600289 NINLQ9Y2I6 1382 aa22.76■■□□□ 1.23
LSM4-206ENST00000600289 ZNF692Q9BU19 519 aaPredicted RBP22.76■■□□□ 1.23
LSM4-206ENST00000600289 CAMTA1Q9Y6Y1 1673 aa22.75■■□□□ 1.23
LSM4-206ENST00000600289 CABLES1Q8TDN4 633 aa22.75■■□□□ 1.23
LSM4-206ENST00000600289 NUP188Q5SRE5 1749 aa22.74■■□□□ 1.23
LSM4-206ENST00000600289 SLIT3O75094 1523 aa22.74■■□□□ 1.23
LSM4-206ENST00000600289 MYOM1P52179 1685 aa22.74■■□□□ 1.23
LSM4-206ENST00000600289 HAP1P54257 671 aaPredicted RBP22.73■■□□□ 1.23
LSM4-206ENST00000600289 THSD7AQ9UPZ6 1657 aa22.73■■□□□ 1.23
LSM4-206ENST00000600289 USP19O94966 1318 aa22.73■■□□□ 1.23
LSM4-206ENST00000600289 TMF1P82094 1093 aa22.71■■□□□ 1.23
LSM4-206ENST00000600289 CCDC9Q9Y3X0 531 aaKnown RBP22.71■■□□□ 1.23
LSM4-206ENST00000600289 KTN1Q86UP2 1357 aaKnown RBP22.71■■□□□ 1.23
LSM4-206ENST00000600289 ABTB2Q8N961 1025 aa22.7■■□□□ 1.22
LSM4-206ENST00000600289 TTC21AQ8NDW8 1320 aa22.7■■□□□ 1.22
LSM4-206ENST00000600289 LMO7Q8WWI1 1683 aa22.69■■□□□ 1.22
LSM4-206ENST00000600289 EZH2Q15910 746 aaKnown RBP22.69■■□□□ 1.22
LSM4-206ENST00000600289 IFFO2Q5TF58 517 aa22.69■■□□□ 1.22
LSM4-206ENST00000600289 TTC21BQ7Z4L5 1316 aa22.68■■□□□ 1.22
LSM4-206ENST00000600289 FAM182BQ5T319 152 aa22.68■■□□□ 1.22
LSM4-206ENST00000600289 NLRP13Q86W25 1043 aa22.68■■□□□ 1.22
LSM4-206ENST00000600289 EDC4Q6P2E9 1401 aaKnown RBP22.67■■□□□ 1.22
LSM4-206ENST00000600289 CPDO75976 1380 aa22.67■■□□□ 1.22
LSM4-206ENST00000600289 A0A1W2PP64 1363 aa22.66■■□□□ 1.22
LSM4-206ENST00000600289 A0A0G2JS52 829 aa22.66■■□□□ 1.22
LSM4-206ENST00000600289 MYT1Q01538 1121 aa22.66■■□□□ 1.22
LSM4-206ENST00000600289 FAM98CQ17RN3 349 aaKnown RBP22.66■■□□□ 1.22
LSM4-206ENST00000600289 CDCA8Q53HL2 280 aa22.66■■□□□ 1.22
LSM4-206ENST00000600289 SLC12A5Q9H2X9 1139 aa22.65■■□□□ 1.22
LSM4-206ENST00000600289 TERF2IPQ9NYB0 399 aa22.65■■□□□ 1.22
LSM4-206ENST00000600289 FAM83GA6ND36 823 aa22.64■■□□□ 1.21
LSM4-206ENST00000600289 HDGFL2Q7Z4V5 671 aaPredicted RBP22.64■■□□□ 1.21
LSM4-206ENST00000600289 TMC1Q8TDI8 760 aa22.64■■□□□ 1.21
LSM4-206ENST00000600289 CAMKK2Q96RR4 588 aa22.64■■□□□ 1.21
LSM4-206ENST00000600289 USP31Q70CQ4 1352 aa22.63■■□□□ 1.21
LSM4-206ENST00000600289 KIAA0232Q92628 1395 aa22.63■■□□□ 1.21
LSM4-206ENST00000600289 PLEKHG5O94827 1062 aa22.63■■□□□ 1.21
LSM4-206ENST00000600289 EIF4G2P78344 907 aaKnown RBP eCLIP22.63■■□□□ 1.21
LSM4-206ENST00000600289 NUTM2GQ5VZR2 741 aa22.63■■□□□ 1.21
LSM4-206ENST00000600289 COL18A1P39060 1754 aa22.63■■□□□ 1.21
LSM4-206ENST00000600289 ANKRD36BQ8N2N9 1353 aa22.63■■□□□ 1.21
LSM4-206ENST00000600289 UTRNP46939 3433 aa22.62■■□□□ 1.21
LSM4-206ENST00000600289 NFAT5O94916 1531 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms