RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 RBM5P52756 815 aaKnown RBP eCLIP24.53■■□□□ 1.525e-7■■■■□ 22.8
UPF1-207ENST00000599848 SYCP1Q15431 976 aa24.53■■□□□ 1.52
UPF1-207ENST00000599848 CASKIN1Q8WXD9 1431 aa24.53■■□□□ 1.52
UPF1-207ENST00000599848 ATAD2Q6PL18 1390 aa24.53■■□□□ 1.52
UPF1-207ENST00000599848 IPO9Q96P70 1041 aaKnown RBP24.52■■□□□ 1.52
UPF1-207ENST00000599848 LRPPRCP42704 1394 aaKnown RBP24.52■■□□□ 1.52
UPF1-207ENST00000599848 ZNF287Q9HBT7 754 aa24.52■■□□□ 1.52
UPF1-207ENST00000599848 MPHOSPH10O00566 681 aaKnown RBP24.52■■□□□ 1.52
UPF1-207ENST00000599848 KRT18P05783 430 aaKnown RBP24.52■■□□□ 1.52
UPF1-207ENST00000599848 PDCP20941 246 aa24.52■■□□□ 1.52
UPF1-207ENST00000599848 SOGA3Q5TF21 947 aa24.52■■□□□ 1.52
UPF1-207ENST00000599848 VPS37CA5D8V6 355 aaPredicted RBP24.51■■□□□ 1.51
UPF1-207ENST00000599848 DESP17661 470 aa24.51■■□□□ 1.51
UPF1-207ENST00000599848 CCAR2Q8N163 923 aaKnown RBP24.51■■□□□ 1.51
UPF1-207ENST00000599848 MTHFSP49914 203 aa24.51■■□□□ 1.51
UPF1-207ENST00000599848 ZFYVE27Q5T4F4 411 aa24.51■■□□□ 1.51
UPF1-207ENST00000599848 CCDC57Q2TAC2 916 aa24.51■■□□□ 1.51
UPF1-207ENST00000599848 ANKRD30BQ9BXX2 1392 aa24.5■■□□□ 1.51
UPF1-207ENST00000599848 CDC45O75419 566 aa24.5■■□□□ 1.51
UPF1-207ENST00000599848 TMEM132EQ6IEE7 984 aa24.5■■□□□ 1.51
UPF1-207ENST00000599848 SURF6O75683 361 aaKnown RBP24.49■■□□□ 1.51
UPF1-207ENST00000599848 TNNT3P45378 269 aaPredicted RBP24.49■■□□□ 1.51
UPF1-207ENST00000599848 CCT4P50991 539 aaKnown RBP24.49■■□□□ 1.51
UPF1-207ENST00000599848 IGHMBP2P38935 993 aaKnown RBP24.49■■□□□ 1.51
UPF1-207ENST00000599848 HDGFL1Q5TGJ6 251 aa24.49■■□□□ 1.51
UPF1-207ENST00000599848 KIF7Q2M1P5 1343 aa24.49■■□□□ 1.51
UPF1-207ENST00000599848 TRIM22Q8IYM9 498 aa24.49■■□□□ 1.51
UPF1-207ENST00000599848 JMYQ8N9B5 988 aa24.48■■□□□ 1.51
UPF1-207ENST00000599848 NAP1L1P55209 391 aaKnown RBP24.48■■□□□ 1.51
UPF1-207ENST00000599848 ACBD3Q9H3P7 528 aa24.48■■□□□ 1.51
UPF1-207ENST00000599848 CNTLNQ9NXG0 1405 aa24.48■■□□□ 1.51
UPF1-207ENST00000599848 MCM2P49736 904 aa24.48■■□□□ 1.51
UPF1-207ENST00000599848 GNAI2P04899 355 aa24.46■■□□□ 1.51
UPF1-207ENST00000599848 HSP90AB2PQ58FF8 381 aa24.46■■□□□ 1.51
UPF1-207ENST00000599848 CDK19Q9BWU1 502 aa24.46■■□□□ 1.51
UPF1-207ENST00000599848 DAPK1P53355 1430 aa24.45■■□□□ 1.51
UPF1-207ENST00000599848 CT47B1P0C2W7 299 aaPredicted RBP24.45■■□□□ 1.51
UPF1-207ENST00000599848 TXLNBQ8N3L3 684 aa24.45■■□□□ 1.5
UPF1-207ENST00000599848 CHMP5Q9NZZ3 219 aa24.45■■□□□ 1.5
UPF1-207ENST00000599848 MAGEC2Q9UBF1 373 aaPredicted RBP24.45■■□□□ 1.5
UPF1-207ENST00000599848 ZPR1O75312 459 aa24.45■■□□□ 1.5
UPF1-207ENST00000599848 ATP2B2Q01814 1243 aa24.45■■□□□ 1.5
UPF1-207ENST00000599848 SLC4A3P48751 1232 aa24.45■■□□□ 1.5
UPF1-207ENST00000599848 ZSCAN29Q8IWY8 852 aaPredicted RBP24.44■■□□□ 1.5
UPF1-207ENST00000599848 DNAJC2Q99543 621 aaKnown RBP24.44■■□□□ 1.5
UPF1-207ENST00000599848 KIF21BO75037 1637 aa24.44■■□□□ 1.5
UPF1-207ENST00000599848 DHX8Q14562 1220 aaKnown RBP24.44■■□□□ 1.5
UPF1-207ENST00000599848 FILIP1LQ4L180 1135 aa24.43■■□□□ 1.5
UPF1-207ENST00000599848 ZNF396Q96N95 335 aaPredicted RBP24.43■■□□□ 1.5
UPF1-207ENST00000599848 LUC7LQ9NQ29 371 aaKnown RBP24.43■■□□□ 1.5
UPF1-207ENST00000599848 PRKAR2BP31323 418 aa24.43■■□□□ 1.5
UPF1-207ENST00000599848 RUFY1Q96T51 708 aa24.43■■□□□ 1.5
UPF1-207ENST00000599848 SRCIN1Q9C0H9 1055 aa24.43■■□□□ 1.5
UPF1-207ENST00000599848 PPP6R1Q9UPN7 881 aa24.43■■□□□ 1.5
UPF1-207ENST00000599848 MTMR7Q9Y216 660 aa24.43■■□□□ 1.5
UPF1-207ENST00000599848 AK7Q96M32 723 aa24.42■■□□□ 1.5
UPF1-207ENST00000599848 CFAP70Q5T0N1 1121 aa24.42■■□□□ 1.5
UPF1-207ENST00000599848 CTNNA3Q9UI47 895 aa24.42■■□□□ 1.5
UPF1-207ENST00000599848 RBM19Q9Y4C8 960 aaKnown RBP24.42■■□□□ 1.5
UPF1-207ENST00000599848 CRBNQ96SW2 442 aa24.42■■□□□ 1.5
UPF1-207ENST00000599848 ANKRD1Q15327 319 aa24.41■■□□□ 1.5
UPF1-207ENST00000599848 HSP90AB3PQ58FF7 597 aa24.41■■□□□ 1.5
UPF1-207ENST00000599848 HOMER1Q86YM7 354 aa24.41■■□□□ 1.5
UPF1-207ENST00000599848 CEP126Q9P2H0 1117 aa24.41■■□□□ 1.5
UPF1-207ENST00000599848 NOL7Q9UMY1 257 aaKnown RBP24.41■■□□□ 1.5
UPF1-207ENST00000599848 SLF2Q8IX21 1173 aa24.4■■□□□ 1.5
UPF1-207ENST00000599848 NCOA2Q15596 1464 aa24.4■■□□□ 1.5
UPF1-207ENST00000599848 STIM1Q13586 685 aa24.4■■□□□ 1.5
UPF1-207ENST00000599848 TWISTNBQ3B726 338 aaPredicted RBP24.4■■□□□ 1.5
UPF1-207ENST00000599848 BMP2KQ9NSY1 1161 aaPredicted RBP24.4■■□□□ 1.5
UPF1-207ENST00000599848 TNIP1Q15025 636 aa24.4■■□□□ 1.5
UPF1-207ENST00000599848 SMARCE1Q969G3 411 aa24.39■■□□□ 1.5
UPF1-207ENST00000599848 CDKL5O76039 1030 aa24.39■■□□□ 1.49
UPF1-207ENST00000599848 BRD4O60885 1362 aaPredicted RBP24.38■■□□□ 1.49
UPF1-207ENST00000599848 SDF4Q9BRK5 362 aa24.38■■□□□ 1.49
UPF1-207ENST00000599848 EFCAB5A4FU69 1503 aa24.38■■□□□ 1.49
UPF1-207ENST00000599848 RRP12Q5JTH9 1297 aaKnown RBP24.38■■□□□ 1.49
UPF1-207ENST00000599848 PDCL3Q9H2J4 239 aa24.38■■□□□ 1.49
UPF1-207ENST00000599848 GCC1Q96CN9 775 aa24.37■■□□□ 1.49
UPF1-207ENST00000599848 TMOD3Q9NYL9 352 aa24.37■■□□□ 1.49
UPF1-207ENST00000599848 LETM1O95202 739 aaPredicted RBP24.37■■□□□ 1.49
UPF1-207ENST00000599848 ZNF644Q9H582 1327 aaPredicted RBP24.36■■□□□ 1.49
UPF1-207ENST00000599848 TROQ12816 1431 aaPredicted RBP24.36■■□□□ 1.49
UPF1-207ENST00000599848 C9orf84Q5VXU9 1444 aa24.36■■□□□ 1.49
UPF1-207ENST00000599848 CCDC69A6NI79 296 aa24.36■■□□□ 1.49
UPF1-207ENST00000599848 SULT6B1Q6IMI4 303 aa24.36■■□□□ 1.49
UPF1-207ENST00000599848 ZNF428Q96B54 188 aa24.36■■□□□ 1.49
UPF1-207ENST00000599848 DACH1Q9UI36 760 aa24.35■■□□□ 1.49
UPF1-207ENST00000599848 AMOTQ4VCS5 1084 aa24.35■■□□□ 1.49
UPF1-207ENST00000599848 NGLY1Q96IV0 654 aa24.34■■□□□ 1.49
UPF1-207ENST00000599848 SLC26A8Q96RN1 970 aa24.34■■□□□ 1.49
UPF1-207ENST00000599848 PDIA4P13667 645 aaKnown RBP24.33■■□□□ 1.49
UPF1-207ENST00000599848 TCP11L2Q8N4U5 519 aa24.33■■□□□ 1.49
UPF1-207ENST00000599848 AKAP2Q9Y2D5 859 aa24.33■■□□□ 1.48
UPF1-207ENST00000599848 CABP1Q9NZU7 370 aa24.32■■□□□ 1.48
UPF1-207ENST00000599848 CCP110O43303 1012 aa24.32■■□□□ 1.48
UPF1-207ENST00000599848 WASF1Q92558 559 aa24.32■■□□□ 1.48
UPF1-207ENST00000599848 ANKRD18AQ8IVF6 992 aa24.32■■□□□ 1.48
UPF1-207ENST00000599848 ARGLU1Q9NWB6 273 aaPredicted RBP24.32■■□□□ 1.48
UPF1-207ENST00000599848 CCDC61Q9Y6R9 512 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms