RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ADAMTS2O95450 1211 aa19.91■□□□□ 0.78
SHKBP1-217ENST00000598558 USP6P35125 1406 aa19.91■□□□□ 0.78
SHKBP1-217ENST00000598558 COL22A1Q8NFW1 1626 aaPredicted RBP19.89■□□□□ 0.77
SHKBP1-217ENST00000598558 ARHGEF10O15013 1369 aa19.88■□□□□ 0.77
SHKBP1-217ENST00000598558 ZNF692Q9BU19 519 aaPredicted RBP19.88■□□□□ 0.77
SHKBP1-217ENST00000598558 TTC21BQ7Z4L5 1316 aa19.87■□□□□ 0.77
SHKBP1-217ENST00000598558 ALS2Q96Q42 1657 aa19.87■□□□□ 0.77
SHKBP1-217ENST00000598558 KTN1Q86UP2 1357 aaKnown RBP19.86■□□□□ 0.77
SHKBP1-217ENST00000598558 MEX3CQ5U5Q3 659 aaKnown RBP19.86■□□□□ 0.77
SHKBP1-217ENST00000598558 ABTB2Q8N961 1025 aa19.86■□□□□ 0.77
SHKBP1-217ENST00000598558 C8orf37Q96NL8 207 aa19.85■□□□□ 0.77
SHKBP1-217ENST00000598558 ZRANB1Q9UGI0 708 aa19.85■□□□□ 0.77
SHKBP1-217ENST00000598558 A0A1W2PP64 1363 aa19.84■□□□□ 0.77
SHKBP1-217ENST00000598558 POTEAQ6S8J7 498 aa19.84■□□□□ 0.77
SHKBP1-217ENST00000598558 PHF23Q9BUL5 403 aaPredicted RBP19.84■□□□□ 0.77
SHKBP1-217ENST00000598558 CDCA8Q53HL2 280 aa19.83■□□□□ 0.77
SHKBP1-217ENST00000598558 BRD4O60885 1362 aaPredicted RBP19.83■□□□□ 0.76
SHKBP1-217ENST00000598558 ILDR2Q71H61 639 aa19.82■□□□□ 0.76
SHKBP1-217ENST00000598558 HDGFL2Q7Z4V5 671 aaPredicted RBP19.82■□□□□ 0.76
SHKBP1-217ENST00000598558 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.82■□□□□ 0.76
SHKBP1-217ENST00000598558 TERF2IPQ9NYB0 399 aa19.82■□□□□ 0.76
SHKBP1-217ENST00000598558 AFF2P51816 1311 aa19.81■□□□□ 0.76
SHKBP1-217ENST00000598558 NGLY1Q96IV0 654 aa19.81■□□□□ 0.76
SHKBP1-217ENST00000598558 POLR3GLQ9BT43 218 aa19.81■□□□□ 0.76
SHKBP1-217ENST00000598558 USP19O94966 1318 aa19.8■□□□□ 0.76
SHKBP1-217ENST00000598558 FAM83GA6ND36 823 aa19.8■□□□□ 0.76
SHKBP1-217ENST00000598558 NLRP6P59044 892 aa19.8■□□□□ 0.76
SHKBP1-217ENST00000598558 NME9Q86XW9 330 aa19.8■□□□□ 0.76
SHKBP1-217ENST00000598558 CARD14Q9BXL6 1004 aa19.8■□□□□ 0.76
SHKBP1-217ENST00000598558 NINLQ9Y2I6 1382 aa19.8■□□□□ 0.76
SHKBP1-217ENST00000598558 HAP1P54257 671 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-217ENST00000598558 FNBP4Q8N3X1 1017 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-217ENST00000598558 AKAP12Q02952 1782 aa19.79■□□□□ 0.76
SHKBP1-217ENST00000598558 TTC21AQ8NDW8 1320 aa19.78■□□□□ 0.76
SHKBP1-217ENST00000598558 NLRP13Q86W25 1043 aa19.78■□□□□ 0.76
SHKBP1-217ENST00000598558 ANKRD36BQ8N2N9 1353 aa19.78■□□□□ 0.76
SHKBP1-217ENST00000598558 GCP02774 474 aa19.77■□□□□ 0.76
SHKBP1-217ENST00000598558 ZC3H6P61129 1189 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-217ENST00000598558 NRKQ7Z2Y5 1582 aa19.77■□□□□ 0.76
SHKBP1-217ENST00000598558 KIF7Q2M1P5 1343 aa19.76■□□□□ 0.75
SHKBP1-217ENST00000598558 EDC4Q6P2E9 1401 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-217ENST00000598558 CRYBG1Q9Y4K1 1723 aa19.76■□□□□ 0.75
SHKBP1-217ENST00000598558 PIK3C2AO00443 1686 aa19.75■□□□□ 0.75
SHKBP1-217ENST00000598558 MON2Q7Z3U7 1717 aa19.75■□□□□ 0.75
SHKBP1-217ENST00000598558 ABCA3Q99758 1704 aa19.75■□□□□ 0.75
SHKBP1-217ENST00000598558 BCL9LQ86UU0 1499 aa19.74■□□□□ 0.75
SHKBP1-217ENST00000598558 CHRNA2Q15822 529 aa19.74■□□□□ 0.75
SHKBP1-217ENST00000598558 USP21Q9UK80 565 aa19.74■□□□□ 0.75
SHKBP1-217ENST00000598558 MYOM1P52179 1685 aa19.74■□□□□ 0.75
SHKBP1-217ENST00000598558 USP31Q70CQ4 1352 aa19.73■□□□□ 0.75
SHKBP1-217ENST00000598558 KIAA0232Q92628 1395 aa19.73■□□□□ 0.75
SHKBP1-217ENST00000598558 SLIT2O94813 1529 aa19.73■□□□□ 0.75
SHKBP1-217ENST00000598558 ZNF772Q68DY9 489 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-217ENST00000598558 QTRT2Q9H974 415 aaKnown RBP19.73■□□□□ 0.75
SHKBP1-217ENST00000598558 FYB1O15117 783 aa19.72■□□□□ 0.75
SHKBP1-217ENST00000598558 PANK3Q9H999 370 aa19.71■□□□□ 0.75
SHKBP1-217ENST00000598558 WASHC2AQ641Q2 1341 aa19.71■□□□□ 0.75
SHKBP1-217ENST00000598558 SLIT3O75094 1523 aa19.71■□□□□ 0.75
SHKBP1-217ENST00000598558 PHRF1Q9P1Y6 1649 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-217ENST00000598558 SOX12O15370 315 aa19.7■□□□□ 0.74
SHKBP1-217ENST00000598558 PRDM11Q9NQV5 511 aa19.7■□□□□ 0.74
SHKBP1-217ENST00000598558 MARF1Q9Y4F3 1742 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-217ENST00000598558 FBLN1P23142 703 aa19.69■□□□□ 0.74
SHKBP1-217ENST00000598558 UNC5CLQ8IV45 518 aa19.69■□□□□ 0.74
SHKBP1-217ENST00000598558 GGNBP2Q9H3C7 697 aa19.69■□□□□ 0.74
SHKBP1-217ENST00000598558 BTG4Q9NY30 223 aa19.69■□□□□ 0.74
SHKBP1-217ENST00000598558 CCDC7Q96M83 1385 aa19.69■□□□□ 0.74
SHKBP1-217ENST00000598558 NSD3Q9BZ95 1437 aa19.68■□□□□ 0.74
SHKBP1-217ENST00000598558 CPDO75976 1380 aa19.68■□□□□ 0.74
SHKBP1-217ENST00000598558 OVOS2A0A0J9YW53 1432 aa19.68■□□□□ 0.74
SHKBP1-217ENST00000598558 OVOS2Q6IE36 1432 aa19.68■□□□□ 0.74
SHKBP1-217ENST00000598558 ARHGEF25Q86VW2 580 aa19.67■□□□□ 0.74
SHKBP1-217ENST00000598558 ATRNO75882 1429 aa19.67■□□□□ 0.74
SHKBP1-217ENST00000598558 ZBTB7CA1YPR0 619 aa19.65■□□□□ 0.74
SHKBP1-217ENST00000598558 TRPC5Q9UL62 973 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-217ENST00000598558 AXIN2Q9Y2T1 843 aa19.65■□□□□ 0.74
SHKBP1-217ENST00000598558 RXRBP28702 533 aa19.64■□□□□ 0.73
SHKBP1-217ENST00000598558 ZEB1P37275 1124 aaPredicted RBP19.64■□□□□ 0.73
SHKBP1-217ENST00000598558 KCNH5Q8NCM2 988 aa19.64■□□□□ 0.73
SHKBP1-217ENST00000598558 NFAT5O94916 1531 aa19.64■□□□□ 0.73
SHKBP1-217ENST00000598558 COG3Q96JB2 828 aa19.63■□□□□ 0.73
SHKBP1-217ENST00000598558 CAMTA1Q9Y6Y1 1673 aa19.62■□□□□ 0.73
SHKBP1-217ENST00000598558 RBM6P78332 1123 aaKnown RBP19.62■□□□□ 0.73
SHKBP1-217ENST00000598558 VPS72Q15906 364 aa19.62■□□□□ 0.73
SHKBP1-217ENST00000598558 AATKQ6ZMQ8 1374 aa19.61■□□□□ 0.73
SHKBP1-217ENST00000598558 PER1O15534 1290 aaPredicted RBP19.61■□□□□ 0.73
SHKBP1-217ENST00000598558 GJD4Q96KN9 370 aaPredicted RBP19.61■□□□□ 0.73
SHKBP1-217ENST00000598558 COL14A1Q05707 1796 aaKnown RBP19.61■□□□□ 0.73
SHKBP1-217ENST00000598558 PLCH1Q4KWH8 1693 aa19.6■□□□□ 0.73
SHKBP1-217ENST00000598558 USP54Q70EL1 1684 aa19.6■□□□□ 0.73
SHKBP1-217ENST00000598558 STRN4Q9NRL3 753 aa19.6■□□□□ 0.73
SHKBP1-217ENST00000598558 LMO7Q8WWI1 1683 aa19.59■□□□□ 0.73
SHKBP1-217ENST00000598558 LARP1Q6PKG0 1096 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-217ENST00000598558 CGNL1Q0VF96 1302 aa19.57■□□□□ 0.72
SHKBP1-217ENST00000598558 RRS1Q15050 365 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-217ENST00000598558 NRAPQ86VF7 1730 aa19.56■□□□□ 0.72
SHKBP1-217ENST00000598558 MAP3K19Q56UN5 1328 aa19.56■□□□□ 0.72
SHKBP1-217ENST00000598558 AMER1Q5JTC6 1135 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-217ENST00000598558 CCDC9Q9Y3X0 531 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-217ENST00000598558 COL18A1P39060 1754 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms