RNA–Protein interactions for RNA: ENST00000597724.6

SSBP4-204, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-204ENST00000597724 ATAD2Q6PL18 1390 aa23.6■■□□□ 1.37
SSBP4-204ENST00000597724 PLEKHG5O94827 1062 aa23.59■■□□□ 1.37
SSBP4-204ENST00000597724 USP47Q96K76 1375 aa23.59■■□□□ 1.37
SSBP4-204ENST00000597724 SLC24A1O60721 1099 aa23.58■■□□□ 1.37
SSBP4-204ENST00000597724 ABCA3Q99758 1704 aa23.58■■□□□ 1.37
SSBP4-204ENST00000597724 BRD4O60885 1362 aaPredicted RBP23.57■■□□□ 1.36
SSBP4-204ENST00000597724 PUS7Q96PZ0 661 aaKnown RBP23.57■■□□□ 1.36
SSBP4-204ENST00000597724 SOCS7O14512 581 aa23.56■■□□□ 1.36
SSBP4-204ENST00000597724 QTRT2Q9H974 415 aaKnown RBP23.56■■□□□ 1.36
SSBP4-204ENST00000597724 ZNF692Q9BU19 519 aaPredicted RBP23.55■■□□□ 1.36
SSBP4-204ENST00000597724 USP21Q9UK80 565 aa23.55■■□□□ 1.36
SSBP4-204ENST00000597724 USP6P35125 1406 aa23.55■■□□□ 1.36
SSBP4-204ENST00000597724 CRYBG1Q9Y4K1 1723 aa23.53■■□□□ 1.36
SSBP4-204ENST00000597724 RXRBP28702 533 aa23.53■■□□□ 1.36
SSBP4-204ENST00000597724 ABTB2Q8N961 1025 aa23.53■■□□□ 1.36
SSBP4-204ENST00000597724 BCL9LQ86UU0 1499 aa23.52■■□□□ 1.36
SSBP4-204ENST00000597724 NUTM2GQ5VZR2 741 aa23.52■■□□□ 1.36
SSBP4-204ENST00000597724 CPSF1Q10570 1443 aaKnown RBP23.51■■□□□ 1.35
SSBP4-204ENST00000597724 SSH2Q76I76 1423 aa23.51■■□□□ 1.35
SSBP4-204ENST00000597724 SLIT2O94813 1529 aa23.51■■□□□ 1.35
SSBP4-204ENST00000597724 AKAP12Q02952 1782 aa23.5■■□□□ 1.35
SSBP4-204ENST00000597724 FAM83GA6ND36 823 aa23.49■■□□□ 1.35
SSBP4-204ENST00000597724 TMC1Q8TDI8 760 aa23.49■■□□□ 1.35
SSBP4-204ENST00000597724 SLC12A5Q9H2X9 1139 aa23.49■■□□□ 1.35
SSBP4-204ENST00000597724 TRPC5Q9UL62 973 aaPredicted RBP23.49■■□□□ 1.35
SSBP4-204ENST00000597724 RBM6P78332 1123 aaKnown RBP23.48■■□□□ 1.35
SSBP4-204ENST00000597724 TMF1P82094 1093 aa23.48■■□□□ 1.35
SSBP4-204ENST00000597724 NLRP13Q86W25 1043 aa23.48■■□□□ 1.35
SSBP4-204ENST00000597724 UNC5CLQ8IV45 518 aa23.47■■□□□ 1.35
SSBP4-204ENST00000597724 TTC21BQ7Z4L5 1316 aa23.47■■□□□ 1.35
SSBP4-204ENST00000597724 KTN1Q86UP2 1357 aaKnown RBP23.47■■□□□ 1.35
SSBP4-204ENST00000597724 ATRNO75882 1429 aa23.47■■□□□ 1.35
SSBP4-204ENST00000597724 CD163L1Q9NR16 1453 aa23.47■■□□□ 1.35
SSBP4-204ENST00000597724 USP19O94966 1318 aa23.46■■□□□ 1.35
SSBP4-204ENST00000597724 PHRF1Q9P1Y6 1649 aaKnown RBP23.46■■□□□ 1.35
SSBP4-204ENST00000597724 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.45■■□□□ 1.34
SSBP4-204ENST00000597724 CDK12Q9NYV4 1490 aaPredicted RBP23.44■■□□□ 1.34
SSBP4-204ENST00000597724 NLRP6P59044 892 aa23.44■■□□□ 1.34
SSBP4-204ENST00000597724 PLCH1Q4KWH8 1693 aa23.44■■□□□ 1.34
SSBP4-204ENST00000597724 TTC21AQ8NDW8 1320 aa23.43■■□□□ 1.34
SSBP4-204ENST00000597724 MON2Q7Z3U7 1717 aa23.43■■□□□ 1.34
SSBP4-204ENST00000597724 NWD2Q9ULI1 1742 aa23.43■■□□□ 1.34
SSBP4-204ENST00000597724 HDGFL2Q7Z4V5 671 aaPredicted RBP23.43■■□□□ 1.34
SSBP4-204ENST00000597724 TERF2IPQ9NYB0 399 aa23.43■■□□□ 1.34
SSBP4-204ENST00000597724 NINLQ9Y2I6 1382 aa23.42■■□□□ 1.34
SSBP4-204ENST00000597724 PIK3C2AO00443 1686 aa23.42■■□□□ 1.34
SSBP4-204ENST00000597724 GCP02774 474 aa23.42■■□□□ 1.34
SSBP4-204ENST00000597724 PRDM11Q9NQV5 511 aa23.42■■□□□ 1.34
SSBP4-204ENST00000597724 NRKQ7Z2Y5 1582 aa23.42■■□□□ 1.34
SSBP4-204ENST00000597724 COL14A1Q05707 1796 aaKnown RBP23.42■■□□□ 1.34
SSBP4-204ENST00000597724 KIAA0232Q92628 1395 aa23.41■■□□□ 1.34
SSBP4-204ENST00000597724 ZC3H6P61129 1189 aaKnown RBP23.41■■□□□ 1.34
SSBP4-204ENST00000597724 EIF4G2P78344 907 aaKnown RBP eCLIP23.41■■□□□ 1.343e-7■■■■□ 23.9
SSBP4-204ENST00000597724 CDCA8Q53HL2 280 aa23.41■■□□□ 1.34
SSBP4-204ENST00000597724 GJD4Q96KN9 370 aaPredicted RBP23.4■■□□□ 1.34
SSBP4-204ENST00000597724 BTG4Q9NY30 223 aa23.4■■□□□ 1.34
SSBP4-204ENST00000597724 A0A1W2PP64 1363 aa23.4■■□□□ 1.34
SSBP4-204ENST00000597724 HSPA5P11021 654 aaKnown RBP23.38■■□□□ 1.33
SSBP4-204ENST00000597724 CHRNA2Q15822 529 aa23.38■■□□□ 1.33
SSBP4-204ENST00000597724 VPS72Q15906 364 aa23.38■■□□□ 1.33
SSBP4-204ENST00000597724 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.38■■□□□ 1.33
SSBP4-204ENST00000597724 CPDO75976 1380 aa23.38■■□□□ 1.33
SSBP4-204ENST00000597724 RGS12O14924 1447 aa23.37■■□□□ 1.33
SSBP4-204ENST00000597724 EDC4Q6P2E9 1401 aaKnown RBP23.37■■□□□ 1.33
SSBP4-204ENST00000597724 SLIT3O75094 1523 aa23.36■■□□□ 1.33
SSBP4-204ENST00000597724 NRAPQ86VF7 1730 aa23.36■■□□□ 1.33
SSBP4-204ENST00000597724 GLI3P10071 1580 aa23.33■■□□□ 1.33
SSBP4-204ENST00000597724 USP31Q70CQ4 1352 aa23.33■■□□□ 1.33
SSBP4-204ENST00000597724 ANKRD36BQ8N2N9 1353 aa23.33■■□□□ 1.33
SSBP4-204ENST00000597724 NME9Q86XW9 330 aa23.33■■□□□ 1.33
SSBP4-204ENST00000597724 ZRANB1Q9UGI0 708 aa23.33■■□□□ 1.33
SSBP4-204ENST00000597724 KCNH5Q8NCM2 988 aa23.32■■□□□ 1.32
SSBP4-204ENST00000597724 CCDC9Q9Y3X0 531 aaKnown RBP23.32■■□□□ 1.32
SSBP4-204ENST00000597724 USP54Q70EL1 1684 aa23.29■■□□□ 1.32
SSBP4-204ENST00000597724 LMO7Q8WWI1 1683 aa23.28■■□□□ 1.32
SSBP4-204ENST00000597724 CAMTA1Q9Y6Y1 1673 aa23.28■■□□□ 1.32
SSBP4-204ENST00000597724 ONECUT3O60422 494 aaPredicted RBP23.28■■□□□ 1.32
SSBP4-204ENST00000597724 AATKQ6ZMQ8 1374 aa23.27■■□□□ 1.32
SSBP4-204ENST00000597724 ARHGEF25Q86VW2 580 aa23.27■■□□□ 1.32
SSBP4-204ENST00000597724 STRN4Q9NRL3 753 aa23.27■■□□□ 1.32
SSBP4-204ENST00000597724 MYOM1P52179 1685 aa23.27■■□□□ 1.32
SSBP4-204ENST00000597724 SPATA31A5Q5VU36 1347 aa23.27■■□□□ 1.32
SSBP4-204ENST00000597724 SPATA31A7Q8IWB4 1347 aa23.27■■□□□ 1.32
SSBP4-204ENST00000597724 ZBTB7CA1YPR0 619 aa23.26■■□□□ 1.31
SSBP4-204ENST00000597724 SOX12O15370 315 aa23.26■■□□□ 1.31
SSBP4-204ENST00000597724 NFAT5O94916 1531 aa23.25■■□□□ 1.31
SSBP4-204ENST00000597724 EVA1CP58658 441 aa23.25■■□□□ 1.31
SSBP4-204ENST00000597724 OVOS2A0A0J9YW53 1432 aa23.25■■□□□ 1.31
SSBP4-204ENST00000597724 OVOS2Q6IE36 1432 aa23.25■■□□□ 1.31
SSBP4-204ENST00000597724 COL18A1P39060 1754 aa23.23■■□□□ 1.31
SSBP4-204ENST00000597724 SEPT12Q8IYM1 358 aa23.22■■□□□ 1.31
SSBP4-204ENST00000597724 AXIN2Q9Y2T1 843 aa23.22■■□□□ 1.31
SSBP4-204ENST00000597724 SPATA31A1Q5TZJ5 1347 aa23.22■■□□□ 1.31
SSBP4-204ENST00000597724 C11orf95C9JLR9 678 aaPredicted RBP23.21■■□□□ 1.31
SSBP4-204ENST00000597724 FAM98CQ17RN3 349 aaKnown RBP23.21■■□□□ 1.31
SSBP4-204ENST00000597724 LARP1Q6PKG0 1096 aaKnown RBP23.21■■□□□ 1.31
SSBP4-204ENST00000597724 POLR3GLQ9BT43 218 aa23.21■■□□□ 1.31
SSBP4-204ENST00000597724 CARD14Q9BXL6 1004 aa23.21■■□□□ 1.31
SSBP4-204ENST00000597724 COL5A2P05997 1499 aaPredicted RBP23.2■■□□□ 1.3
SSBP4-204ENST00000597724 FYB1O15117 783 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms