RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 DCAF11Q8TEB1 546 aa23.22■■□□□ 1.31
USHBP1-206ENST00000596436 THSD7AQ9UPZ6 1657 aa23.21■■□□□ 1.31
USHBP1-206ENST00000596436 PLEKHG5O94827 1062 aa23.2■■□□□ 1.3
USHBP1-206ENST00000596436 BTG4Q9NY30 223 aa23.2■■□□□ 1.3
USHBP1-206ENST00000596436 CCDC9Q9Y3X0 531 aaKnown RBP23.2■■□□□ 1.3
USHBP1-206ENST00000596436 LRP5O75197 1615 aa23.19■■□□□ 1.3
USHBP1-206ENST00000596436 KDM2AQ9Y2K7 1162 aa23.18■■□□□ 1.3
USHBP1-206ENST00000596436 TOPAZ1Q8N9V7 1692 aa23.18■■□□□ 1.3
USHBP1-206ENST00000596436 SF3B2Q13435 895 aaKnown RBP23.17■■□□□ 1.3
USHBP1-206ENST00000596436 PHRF1Q9P1Y6 1649 aaKnown RBP23.17■■□□□ 1.3
USHBP1-206ENST00000596436 SPATA31A5Q5VU36 1347 aa23.16■■□□□ 1.3
USHBP1-206ENST00000596436 SPATA31A7Q8IWB4 1347 aa23.16■■□□□ 1.3
USHBP1-206ENST00000596436 FAM98CQ17RN3 349 aaKnown RBP23.16■■□□□ 1.3
USHBP1-206ENST00000596436 RGPD1P0DJD0 1748 aa23.16■■□□□ 1.3
USHBP1-206ENST00000596436 KIAA1210Q9ULL0 1709 aa23.16■■□□□ 1.3
USHBP1-206ENST00000596436 NGDNQ8NEJ9 315 aaKnown RBP23.13■■□□□ 1.29
USHBP1-206ENST00000596436 NUDT16Q96DE0 195 aaKnown RBP23.12■■□□□ 1.29
USHBP1-206ENST00000596436 TNS1Q9HBL0 1735 aaKnown RBP23.12■■□□□ 1.29
USHBP1-206ENST00000596436 POLR3AO14802 1390 aaPredicted RBP23.12■■□□□ 1.29
USHBP1-206ENST00000596436 DISP2A7MBM2 1401 aa23.11■■□□□ 1.29
USHBP1-206ENST00000596436 PCGF6Q9BYE7 350 aa23.11■■□□□ 1.29
USHBP1-206ENST00000596436 BAG6P46379 1132 aa23.09■■□□□ 1.29
USHBP1-206ENST00000596436 PRDM11Q9NQV5 511 aa23.09■■□□□ 1.29
USHBP1-206ENST00000596436 KIAA0232Q92628 1395 aa23.09■■□□□ 1.29
USHBP1-206ENST00000596436 PAK3O75914 559 aaPredicted RBP23.08■■□□□ 1.29
USHBP1-206ENST00000596436 SPATA31A1Q5TZJ5 1347 aa23.08■■□□□ 1.28
USHBP1-206ENST00000596436 A0A0G2JS52 829 aa23.07■■□□□ 1.28
USHBP1-206ENST00000596436 MYT1Q01538 1121 aa23.07■■□□□ 1.28
USHBP1-206ENST00000596436 NRKQ7Z2Y5 1582 aa23.06■■□□□ 1.28
USHBP1-206ENST00000596436 CDK19Q9BWU1 502 aa23.06■■□□□ 1.28
USHBP1-206ENST00000596436 PLEKHG3A1L390 1219 aa23.05■■□□□ 1.28
USHBP1-206ENST00000596436 SIN3AQ96ST3 1273 aa23.05■■□□□ 1.28
USHBP1-206ENST00000596436 LMO7Q8WWI1 1683 aa23.04■■□□□ 1.28
USHBP1-206ENST00000596436 CCDC61Q9Y6R9 512 aa23.04■■□□□ 1.28
USHBP1-206ENST00000596436 ACEP12821 1306 aa23.03■■□□□ 1.28
USHBP1-206ENST00000596436 NBPF8Q3BBV2 869 aa23.02■■□□□ 1.28
USHBP1-206ENST00000596436 FAM182BQ5T319 152 aa23.02■■□□□ 1.28
USHBP1-206ENST00000596436 CHRNA2Q15822 529 aa23.01■■□□□ 1.27
USHBP1-206ENST00000596436 USP19O94966 1318 aa23.01■■□□□ 1.27
USHBP1-206ENST00000596436 CPDO75976 1380 aa23.01■■□□□ 1.27
USHBP1-206ENST00000596436 CAMTA1Q9Y6Y1 1673 aa23■■□□□ 1.27
USHBP1-206ENST00000596436 EN1Q05925 392 aaPredicted RBP23■■□□□ 1.27
USHBP1-206ENST00000596436 SSH2Q76I76 1423 aa22.99■■□□□ 1.27
USHBP1-206ENST00000596436 PSDA5PKW4 1024 aaPredicted RBP22.98■■□□□ 1.27
USHBP1-206ENST00000596436 ZC3H6P61129 1189 aaKnown RBP22.98■■□□□ 1.27
USHBP1-206ENST00000596436 BARGINQ6ZT62 677 aa22.98■■□□□ 1.27
USHBP1-206ENST00000596436 NBPF1Q3BBV0 1214 aa22.97■■□□□ 1.27
USHBP1-206ENST00000596436 NEUROD1Q13562 356 aa22.96■■□□□ 1.27
USHBP1-206ENST00000596436 BRD4O60885 1362 aaPredicted RBP22.95■■□□□ 1.26
USHBP1-206ENST00000596436 NUTM2GQ5VZR2 741 aa22.95■■□□□ 1.26
USHBP1-206ENST00000596436 FAM196AQ6ZSG2 479 aa22.95■■□□□ 1.26
USHBP1-206ENST00000596436 PARD3Q8TEW0 1356 aa22.95■■□□□ 1.26
USHBP1-206ENST00000596436 RREB1Q92766 1687 aa22.95■■□□□ 1.26
USHBP1-206ENST00000596436 STRN4Q9NRL3 753 aa22.95■■□□□ 1.26
USHBP1-206ENST00000596436 PPIP5K1Q6PFW1 1433 aa22.94■■□□□ 1.26
USHBP1-206ENST00000596436 CAMKK2Q96RR4 588 aa22.94■■□□□ 1.26
USHBP1-206ENST00000596436 QRICH2Q9H0J4 1663 aa22.93■■□□□ 1.26
USHBP1-206ENST00000596436 ABTB2Q8N961 1025 aa22.93■■□□□ 1.26
USHBP1-206ENST00000596436 PARP4Q9UKK3 1724 aaKnown RBP22.93■■□□□ 1.26
USHBP1-206ENST00000596436 EZH2Q15910 746 aaKnown RBP22.92■■□□□ 1.26
USHBP1-206ENST00000596436 L3MBTL2Q969R5 705 aa22.92■■□□□ 1.26
USHBP1-206ENST00000596436 CENPJQ9HC77 1338 aaPredicted RBP22.91■■□□□ 1.26
USHBP1-206ENST00000596436 COL5A2P05997 1499 aaPredicted RBP22.91■■□□□ 1.26
USHBP1-206ENST00000596436 TRIM37O94972 964 aa22.9■■□□□ 1.26
USHBP1-206ENST00000596436 R3HDM1Q15032 1099 aaKnown RBP22.9■■□□□ 1.26
USHBP1-206ENST00000596436 LARP1Q6PKG0 1096 aaKnown RBP22.9■■□□□ 1.26
USHBP1-206ENST00000596436 SLIT3O75094 1523 aa22.9■■□□□ 1.26
USHBP1-206ENST00000596436 NUP188Q5SRE5 1749 aa22.9■■□□□ 1.26
USHBP1-206ENST00000596436 GCP02774 474 aa22.88■■□□□ 1.25
USHBP1-206ENST00000596436 EVA1CP58658 441 aa22.88■■□□□ 1.25
USHBP1-206ENST00000596436 NLRP13Q86W25 1043 aa22.88■■□□□ 1.25
USHBP1-206ENST00000596436 TCP11L2Q8N4U5 519 aa22.88■■□□□ 1.25
USHBP1-206ENST00000596436 THRAP3Q9Y2W1 955 aaKnown RBP22.88■■□□□ 1.25
USHBP1-206ENST00000596436 USP6P35125 1406 aa22.88■■□□□ 1.25
USHBP1-206ENST00000596436 USP35Q9P2H5 1018 aa22.87■■□□□ 1.25
USHBP1-206ENST00000596436 PEAK1Q9H792 1746 aa22.87■■□□□ 1.25
USHBP1-206ENST00000596436 SRPK2P78362 688 aaKnown RBP22.86■■□□□ 1.25
USHBP1-206ENST00000596436 CABP2Q9NPB3 220 aa22.86■■□□□ 1.25
USHBP1-206ENST00000596436 PIK3C2AO00443 1686 aa22.85■■□□□ 1.25
USHBP1-206ENST00000596436 APBA3O96018 575 aa22.85■■□□□ 1.25
USHBP1-206ENST00000596436 COL18A1P39060 1754 aa22.85■■□□□ 1.25
USHBP1-206ENST00000596436 CRB1P82279 1406 aa22.84■■□□□ 1.25
USHBP1-206ENST00000596436 TRPM1Q7Z4N2 1603 aa22.84■■□□□ 1.25
USHBP1-206ENST00000596436 PDE3BQ13370 1112 aa22.84■■□□□ 1.25
USHBP1-206ENST00000596436 AATKQ6ZMQ8 1374 aa22.84■■□□□ 1.25
USHBP1-206ENST00000596436 LRRC37A3O60309 1634 aa22.82■■□□□ 1.24
USHBP1-206ENST00000596436 RGPD3A6NKT7 1758 aaPredicted RBP22.82■■□□□ 1.24
USHBP1-206ENST00000596436 RGPD4Q7Z3J3 1758 aa22.82■■□□□ 1.24
USHBP1-206ENST00000596436 WNK3Q9BYP7 1800 aa22.81■■□□□ 1.24
USHBP1-206ENST00000596436 CABP1Q9NZU7 370 aa22.81■■□□□ 1.24
USHBP1-206ENST00000596436 TONSLQ96HA7 1378 aa22.8■■□□□ 1.24
USHBP1-206ENST00000596436 C11orf95C9JLR9 678 aaPredicted RBP22.79■■□□□ 1.24
USHBP1-206ENST00000596436 SBF2Q86WG5 1849 aa22.79■■□□□ 1.24
USHBP1-206ENST00000596436 AKAP12Q02952 1782 aa22.78■■□□□ 1.24
USHBP1-206ENST00000596436 OVOS2A0A0G2JMS6 1433 aa22.77■■□□□ 1.24
USHBP1-206ENST00000596436 OVOS2A0A0J9YW53 1432 aa22.77■■□□□ 1.24
USHBP1-206ENST00000596436 OVOS2Q6IE36 1432 aa22.77■■□□□ 1.24
USHBP1-206ENST00000596436 NLRP6P59044 892 aa22.77■■□□□ 1.24
USHBP1-206ENST00000596436 EVC2Q86UK5 1308 aa22.75■■□□□ 1.23
USHBP1-206ENST00000596436 CPSF1Q10570 1443 aaKnown RBP22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms