RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.58■■□□□ 1.05
TRIM28-205ENST00000595028 GLI3P10071 1580 aa21.58■■□□□ 1.05
TRIM28-205ENST00000595028 CRYBG1Q9Y4K1 1723 aa21.58■■□□□ 1.04
TRIM28-205ENST00000595028 NGDNQ8NEJ9 315 aaKnown RBP21.57■■□□□ 1.04
TRIM28-205ENST00000595028 POLR3AO14802 1390 aaPredicted RBP21.56■■□□□ 1.04
TRIM28-205ENST00000595028 CCDC61Q9Y6R9 512 aa21.55■■□□□ 1.04
TRIM28-205ENST00000595028 SRPK2P78362 688 aaKnown RBP21.54■■□□□ 1.04
TRIM28-205ENST00000595028 SF3B2Q13435 895 aaKnown RBP21.54■■□□□ 1.04
TRIM28-205ENST00000595028 LMOD2Q6P5Q4 547 aa21.54■■□□□ 1.04
TRIM28-205ENST00000595028 PCGF6Q9BYE7 350 aa21.54■■□□□ 1.04
TRIM28-205ENST00000595028 PPIP5K1Q6PFW1 1433 aa21.54■■□□□ 1.04
TRIM28-205ENST00000595028 PLCH1Q4KWH8 1693 aa21.53■■□□□ 1.04
TRIM28-205ENST00000595028 SBNO2Q9Y2G9 1366 aa21.52■■□□□ 1.04
TRIM28-205ENST00000595028 PLEKHG3A1L390 1219 aa21.52■■□□□ 1.04
TRIM28-205ENST00000595028 UNC5CLQ8IV45 518 aa21.52■■□□□ 1.04
TRIM28-205ENST00000595028 CARD11Q9BXL7 1154 aa21.52■■□□□ 1.04
TRIM28-205ENST00000595028 CABP2Q9NPB3 220 aa21.52■■□□□ 1.04
TRIM28-205ENST00000595028 SLIT2O94813 1529 aa21.51■■□□□ 1.03
TRIM28-205ENST00000595028 PSDA5PKW4 1024 aaPredicted RBP21.51■■□□□ 1.03
TRIM28-205ENST00000595028 CABLES1Q8TDN4 633 aa21.51■■□□□ 1.03
TRIM28-205ENST00000595028 NWD2Q9ULI1 1742 aa21.51■■□□□ 1.03
TRIM28-205ENST00000595028 ACEP12821 1306 aa21.51■■□□□ 1.03
TRIM28-205ENST00000595028 EVC2Q86UK5 1308 aa21.51■■□□□ 1.03
TRIM28-205ENST00000595028 HAP1P54257 671 aaPredicted RBP21.5■■□□□ 1.03
TRIM28-205ENST00000595028 PHRF1Q9P1Y6 1649 aaKnown RBP21.5■■□□□ 1.03
TRIM28-205ENST00000595028 CLSPNQ9HAW4 1339 aa21.5■■□□□ 1.03
TRIM28-205ENST00000595028 SEPT12Q8IYM1 358 aa21.48■■□□□ 1.03
TRIM28-205ENST00000595028 PAK3O75914 559 aaPredicted RBP21.47■■□□□ 1.03
TRIM28-205ENST00000595028 PLEKHG5O94827 1062 aa21.47■■□□□ 1.03
TRIM28-205ENST00000595028 AKAP12Q02952 1782 aa21.46■■□□□ 1.03
TRIM28-205ENST00000595028 NRAPQ86VF7 1730 aa21.45■■□□□ 1.02
TRIM28-205ENST00000595028 COL14A1Q05707 1796 aaKnown RBP21.45■■□□□ 1.02
TRIM28-205ENST00000595028 NRKQ7Z2Y5 1582 aa21.44■■□□□ 1.02
TRIM28-205ENST00000595028 BRD4O60885 1362 aaPredicted RBP21.43■■□□□ 1.02
TRIM28-205ENST00000595028 USP6P35125 1406 aa21.43■■□□□ 1.02
TRIM28-205ENST00000595028 CABP1Q9NZU7 370 aa21.42■■□□□ 1.02
TRIM28-205ENST00000595028 KRT27Q7Z3Y8 459 aa21.41■■□□□ 1.02
TRIM28-205ENST00000595028 BAG6P46379 1132 aa21.4■■□□□ 1.02
TRIM28-205ENST00000595028 VPS72Q15906 364 aa21.4■■□□□ 1.02
TRIM28-205ENST00000595028 MON2Q7Z3U7 1717 aa21.4■■□□□ 1.02
TRIM28-205ENST00000595028 ONECUT3O60422 494 aaPredicted RBP21.39■■□□□ 1.01
TRIM28-205ENST00000595028 TIMELESSQ9UNS1 1208 aa21.39■■□□□ 1.01
TRIM28-205ENST00000595028 PIK3C2AO00443 1686 aa21.39■■□□□ 1.01
TRIM28-205ENST00000595028 SSH2Q76I76 1423 aa21.38■■□□□ 1.01
TRIM28-205ENST00000595028 USP19O94966 1318 aa21.37■■□□□ 1.01
TRIM28-205ENST00000595028 NUTM2GQ5VZR2 741 aa21.37■■□□□ 1.01
TRIM28-205ENST00000595028 FAM83GA6ND36 823 aa21.36■■□□□ 1.01
TRIM28-205ENST00000595028 ABTB2Q8N961 1025 aa21.36■■□□□ 1.01
TRIM28-205ENST00000595028 CCDC9Q9Y3X0 531 aaKnown RBP21.36■■□□□ 1.01
TRIM28-205ENST00000595028 CPSF1Q10570 1443 aaKnown RBP21.36■■□□□ 1.01
TRIM28-205ENST00000595028 KIAA0232Q92628 1395 aa21.35■■□□□ 1.01
TRIM28-205ENST00000595028 USP47Q96K76 1375 aa21.35■■□□□ 1.01
TRIM28-205ENST00000595028 R3HDM1Q15032 1099 aaKnown RBP21.34■■□□□ 1.01
TRIM28-205ENST00000595028 PRDM11Q9NQV5 511 aa21.34■■□□□ 1.01
TRIM28-205ENST00000595028 SLIT3O75094 1523 aa21.34■■□□□ 1.01
TRIM28-205ENST00000595028 EN1Q05925 392 aaPredicted RBP21.33■■□□□ 1.01
TRIM28-205ENST00000595028 TESK2Q96S53 571 aa21.33■■□□□ 1.01
TRIM28-205ENST00000595028 ST20-MTHFSA0A0A6YYL1 179 aa21.32■■□□□ 1
TRIM28-205ENST00000595028 CCER1Q8TC90 406 aaPredicted RBP21.32■■□□□ 1
TRIM28-205ENST00000595028 BTG4Q9NY30 223 aa21.32■■□□□ 1
TRIM28-205ENST00000595028 CD163L1Q9NR16 1453 aa21.32■■□□□ 1
TRIM28-205ENST00000595028 LMO7Q8WWI1 1683 aa21.31■■□□□ 1
TRIM28-205ENST00000595028 A0A0G2JS52 829 aa21.31■■□□□ 1
TRIM28-205ENST00000595028 MYT1Q01538 1121 aa21.31■■□□□ 1
TRIM28-205ENST00000595028 RGPD1P0DJD0 1748 aa21.3■■□□□ 1
TRIM28-205ENST00000595028 NLRP13Q86W25 1043 aa21.3■■□□□ 1
TRIM28-205ENST00000595028 ZNF692Q9BU19 519 aaPredicted RBP21.3■■□□□ 1
TRIM28-205ENST00000595028 CPDO75976 1380 aa21.3■■□□□ 1
TRIM28-205ENST00000595028 USP54Q70EL1 1684 aa21.29■■□□□ 1
TRIM28-205ENST00000595028 KTN1Q86UP2 1357 aaKnown RBP21.29■■□□□ 1
TRIM28-205ENST00000595028 YY1P25490 414 aa21.29■■□□□ 1
TRIM28-205ENST00000595028 PUS7Q96PZ0 661 aaKnown RBP21.29■■□□□ 1
TRIM28-205ENST00000595028 TTC21BQ7Z4L5 1316 aa21.29■■□□□ 1
TRIM28-205ENST00000595028 TTC21AQ8NDW8 1320 aa21.28■■□□□ 1
TRIM28-205ENST00000595028 ZC3H6P61129 1189 aaKnown RBP21.27■■□□□ 1
TRIM28-205ENST00000595028 NINLQ9Y2I6 1382 aa21.26■□□□□ 0.99
TRIM28-205ENST00000595028 SLC24A1O60721 1099 aa21.26■□□□□ 0.99
TRIM28-205ENST00000595028 NLRP6P59044 892 aa21.26■□□□□ 0.99
TRIM28-205ENST00000595028 CHRNA2Q15822 529 aa21.26■□□□□ 0.99
TRIM28-205ENST00000595028 FAM98CQ17RN3 349 aaKnown RBP21.26■□□□□ 0.99
TRIM28-205ENST00000595028 GCP02774 474 aa21.25■□□□□ 0.99
TRIM28-205ENST00000595028 TMC1Q8TDI8 760 aa21.25■□□□□ 0.99
TRIM28-205ENST00000595028 CAMTA1Q9Y6Y1 1673 aa21.24■□□□□ 0.99
TRIM28-205ENST00000595028 A0A1W2PP64 1363 aa21.24■□□□□ 0.99
TRIM28-205ENST00000595028 FAM182BQ5T319 152 aa21.24■□□□□ 0.99
TRIM28-205ENST00000595028 THSD7AQ9UPZ6 1657 aa21.24■□□□□ 0.99
TRIM28-205ENST00000595028 TNS1Q9HBL0 1735 aaKnown RBP21.24■□□□□ 0.99
TRIM28-205ENST00000595028 DISP2A7MBM2 1401 aa21.23■□□□□ 0.99
TRIM28-205ENST00000595028 EDC4Q6P2E9 1401 aaKnown RBP21.23■□□□□ 0.99
TRIM28-205ENST00000595028 SLC12A5Q9H2X9 1139 aa21.23■□□□□ 0.99
TRIM28-205ENST00000595028 SPATA31A5Q5VU36 1347 aa21.23■□□□□ 0.99
TRIM28-205ENST00000595028 SPATA31A7Q8IWB4 1347 aa21.23■□□□□ 0.99
TRIM28-205ENST00000595028 HDGFL2Q7Z4V5 671 aaPredicted RBP21.22■□□□□ 0.99
TRIM28-205ENST00000595028 NFAT5O94916 1531 aa21.22■□□□□ 0.99
TRIM28-205ENST00000595028 COL18A1P39060 1754 aa21.21■□□□□ 0.99
TRIM28-205ENST00000595028 EZH2Q15910 746 aaKnown RBP21.21■□□□□ 0.99
TRIM28-205ENST00000595028 TERF2IPQ9NYB0 399 aa21.21■□□□□ 0.99
TRIM28-205ENST00000595028 TMF1P82094 1093 aa21.2■□□□□ 0.98
TRIM28-205ENST00000595028 USP31Q70CQ4 1352 aa21.2■□□□□ 0.98
TRIM28-205ENST00000595028 COL5A2P05997 1499 aaPredicted RBP21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms