RNA–Protein interactions for RNA: ENST00000590696.1

DDX39A-215, Transcript of DExD-box helicase 39A, human

TSL 4

Gene DDX39A, Length 563 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-215	ENST00000590696	KIAA1210	Q9ULL0	1709 aa		31.59	■■■□□ 2.65
DDX39A-215	ENST00000590696	ZRANB1	Q9UGI0	708 aa		31.58	■■■□□ 2.65
DDX39A-215	ENST00000590696	NBPF1	Q3BBV0	1214 aa		31.57	■■■□□ 2.64
DDX39A-215	ENST00000590696	COL14A1	Q05707	1796 aa	Known RBP	31.57	■■■□□ 2.64
DDX39A-215	ENST00000590696	NRAP	Q86VF7	1730 aa		31.57	■■■□□ 2.64
DDX39A-215	ENST00000590696	BLM	P54132	1417 aa	Predicted RBP	31.57	■■■□□ 2.64
DDX39A-215	ENST00000590696	KRT27	Q7Z3Y8	459 aa		31.55	■■■□□ 2.64
DDX39A-215	ENST00000590696	CRYBG1	Q9Y4K1	1723 aa		31.55	■■■□□ 2.64
DDX39A-215	ENST00000590696		A0A0G2JS52	829 aa		31.53	■■■□□ 2.64
DDX39A-215	ENST00000590696	MYT1	Q01538	1121 aa		31.53	■■■□□ 2.64
DDX39A-215	ENST00000590696	FAM98C	Q17RN3	349 aa	Known RBP	31.52	■■■□□ 2.64
DDX39A-215	ENST00000590696	CCDC61	Q9Y6R9	512 aa		31.51	■■■□□ 2.63
DDX39A-215	ENST00000590696	ACE	P12821	1306 aa		31.5	■■■□□ 2.63
DDX39A-215	ENST00000590696	PRDM11	Q9NQV5	511 aa		31.5	■■■□□ 2.63
DDX39A-215	ENST00000590696	POLR3A	O14802	1390 aa	Predicted RBP	31.49	■■■□□ 2.63
DDX39A-215	ENST00000590696	SF3B2	Q13435	895 aa	Known RBP	31.49	■■■□□ 2.63
DDX39A-215	ENST00000590696	TOPAZ1	Q8N9V7	1692 aa		31.48	■■■□□ 2.63
DDX39A-215	ENST00000590696	NBPF8	Q3BBV2	869 aa		31.48	■■■□□ 2.63
DDX39A-215	ENST00000590696	DEFB132	Q7Z7B7	95 aa		31.48	■■■□□ 2.63
DDX39A-215	ENST00000590696	PLEKHG3	A1L390	1219 aa		31.47	■■■□□ 2.63
DDX39A-215	ENST00000590696	NUTM2G	Q5VZR2	741 aa		31.47	■■■□□ 2.63
DDX39A-215	ENST00000590696	SPATA31A5	Q5VU36	1347 aa		31.46	■■■□□ 2.63
DDX39A-215	ENST00000590696	SPATA31A7	Q8IWB4	1347 aa		31.46	■■■□□ 2.63
DDX39A-215	ENST00000590696	KIAA0232	Q92628	1395 aa		31.44	■■■□□ 2.62
DDX39A-215	ENST00000590696	PHRF1	Q9P1Y6	1649 aa	Known RBP	31.43	■■■□□ 2.62
DDX39A-215	ENST00000590696	CHRNA2	Q15822	529 aa		31.43	■■■□□ 2.62
DDX39A-215	ENST00000590696	CENPJ	Q9HC77	1338 aa	Predicted RBP	31.43	■■■□□ 2.62
DDX39A-215	ENST00000590696	ZC3H6	P61129	1189 aa	Known RBP	31.42	■■■□□ 2.62
DDX39A-215	ENST00000590696	SRPK2	P78362	688 aa	Known RBP	31.42	■■■□□ 2.62
DDX39A-215	ENST00000590696	L3MBTL2	Q969R5	705 aa		31.4	■■■□□ 2.62
DDX39A-215	ENST00000590696	SRCAP	Q6ZRS2	3230 aa		31.39	■■■□□ 2.62
DDX39A-215	ENST00000590696	ABTB2	Q8N961	1025 aa		31.39	■■■□□ 2.62
DDX39A-215	ENST00000590696	CABP2	Q9NPB3	220 aa		31.39	■■■□□ 2.62
DDX39A-215	ENST00000590696	STRN4	Q9NRL3	753 aa		31.37	■■■□□ 2.61
DDX39A-215	ENST00000590696	PPIP5K1	Q6PFW1	1433 aa		31.37	■■■□□ 2.61
DDX39A-215	ENST00000590696	SPATA31A1	Q5TZJ5	1347 aa		31.35	■■■□□ 2.61
DDX39A-215	ENST00000590696	FAM182B	Q5T319	152 aa		31.35	■■■□□ 2.61
DDX39A-215	ENST00000590696	SIN3A	Q96ST3	1273 aa		31.35	■■■□□ 2.61
DDX39A-215	ENST00000590696	QRICH2	Q9H0J4	1663 aa		31.34	■■■□□ 2.61
DDX39A-215	ENST00000590696	THSD7A	Q9UPZ6	1657 aa		31.34	■■■□□ 2.61
DDX39A-215	ENST00000590696	BAG6	P46379	1132 aa		31.33	■■■□□ 2.61
DDX39A-215	ENST00000590696	NRK	Q7Z2Y5	1582 aa		31.31	■■■□□ 2.6
DDX39A-215	ENST00000590696	EVA1C	P58658	441 aa		31.3	■■■□□ 2.6
DDX39A-215	ENST00000590696	NLRP13	Q86W25	1043 aa		31.3	■■■□□ 2.6
DDX39A-215	ENST00000590696	USP19	O94966	1318 aa		31.29	■■■□□ 2.6
DDX39A-215	ENST00000590696	NEUROD1	Q13562	356 aa		31.29	■■■□□ 2.6
DDX39A-215	ENST00000590696	CABP1	Q9NZU7	370 aa		31.28	■■■□□ 2.6
DDX39A-215	ENST00000590696	USP35	Q9P2H5	1018 aa		31.27	■■■□□ 2.6
DDX39A-215	ENST00000590696	CPD	O75976	1380 aa		31.27	■■■□□ 2.6
DDX39A-215	ENST00000590696	SSH2	Q76I76	1423 aa		31.26	■■■□□ 2.6
DDX39A-215	ENST00000590696	GC	P02774	474 aa		31.26	■■■□□ 2.59
DDX39A-215	ENST00000590696	TRPM1	Q7Z4N2	1603 aa		31.26	■■■□□ 2.59
DDX39A-215	ENST00000590696	CAMTA1	Q9Y6Y1	1673 aa		31.25	■■■□□ 2.59
DDX39A-215	ENST00000590696	BRD4	O60885	1362 aa	Predicted RBP	31.25	■■■□□ 2.59
DDX39A-215	ENST00000590696	RGPD1	P0DJD0	1748 aa		31.24	■■■□□ 2.59
DDX39A-215	ENST00000590696	EN1	Q05925	392 aa	Predicted RBP	31.23	■■■□□ 2.59
DDX39A-215	ENST00000590696	LARP1	Q6PKG0	1096 aa	Known RBP	31.23	■■■□□ 2.59
DDX39A-215	ENST00000590696	EVC2	Q86UK5	1308 aa		31.23	■■■□□ 2.59
DDX39A-215	ENST00000590696	USP6	P35125	1406 aa		31.22	■■■□□ 2.59
DDX39A-215	ENST00000590696	LMO7	Q8WWI1	1683 aa		31.22	■■■□□ 2.59
DDX39A-215	ENST00000590696	ROCK2	O75116	1388 aa	Known RBP	31.21	■■■□□ 2.59
DDX39A-215	ENST00000590696	BARGIN	Q6ZT62	677 aa		31.21	■■■□□ 2.59
DDX39A-215	ENST00000590696	NLRP6	P59044	892 aa		31.19	■■■□□ 2.58
DDX39A-215	ENST00000590696	FAM196A	Q6ZSG2	479 aa		31.19	■■■□□ 2.58
DDX39A-215	ENST00000590696	PSD	A5PKW4	1024 aa	Predicted RBP	31.17	■■■□□ 2.58
DDX39A-215	ENST00000590696	TCP11L2	Q8N4U5	519 aa		31.17	■■■□□ 2.58
DDX39A-215	ENST00000590696	ZBTB7C	A1YPR0	619 aa		31.16	■■■□□ 2.58
DDX39A-215	ENST00000590696	TRIM37	O94972	964 aa		31.16	■■■□□ 2.58
DDX39A-215	ENST00000590696	TNS1	Q9HBL0	1735 aa	Known RBP	31.15	■■■□□ 2.58
DDX39A-215	ENST00000590696	PDE3B	Q13370	1112 aa		31.15	■■■□□ 2.58
DDX39A-215	ENST00000590696	DISP2	A7MBM2	1401 aa		31.15	■■■□□ 2.58
DDX39A-215	ENST00000590696	THRAP3	Q9Y2W1	955 aa	Known RBP	31.13	■■■□□ 2.57
DDX39A-215	ENST00000590696	COL5A2	P05997	1499 aa	Predicted RBP	31.13	■■■□□ 2.57
DDX39A-215	ENST00000590696	EZH2	Q15910	746 aa	Known RBP	31.12	■■■□□ 2.57
DDX39A-215	ENST00000590696	SLIT3	O75094	1523 aa		31.12	■■■□□ 2.57
DDX39A-215	ENST00000590696	ZNF692	Q9BU19	519 aa	Predicted RBP	31.1	■■■□□ 2.57
DDX39A-215	ENST00000590696	PIK3C2A	O00443	1686 aa		31.09	■■■□□ 2.57
DDX39A-215	ENST00000590696	AATK	Q6ZMQ8	1374 aa		31.08	■■■□□ 2.57
DDX39A-215	ENST00000590696	APBA3	O96018	575 aa		31.08	■■■□□ 2.57
DDX39A-215	ENST00000590696	CAMKK2	Q96RR4	588 aa		31.08	■■■□□ 2.57
DDX39A-215	ENST00000590696	TTC21B	Q7Z4L5	1316 aa		31.07	■■■□□ 2.56
DDX39A-215	ENST00000590696	CRB1	P82279	1406 aa		31.07	■■■□□ 2.56
DDX39A-215	ENST00000590696	LRP5	O75197	1615 aa		31.06	■■■□□ 2.56
DDX39A-215	ENST00000590696	R3HDM1	Q15032	1099 aa	Known RBP	31.05	■■■□□ 2.56
DDX39A-215	ENST00000590696	AKAP12	Q02952	1782 aa		31.04	■■■□□ 2.56
DDX39A-215	ENST00000590696	PARP4	Q9UKK3	1724 aa	Known RBP	31.02	■■■□□ 2.56
DDX39A-215	ENST00000590696	TTC21A	Q8NDW8	1320 aa		31.01	■■■□□ 2.56
DDX39A-215	ENST00000590696	CPSF1	Q10570	1443 aa	Known RBP	31.01	■■■□□ 2.55
DDX39A-215	ENST00000590696	TOM1L2	Q6ZVM7	507 aa		31.01	■■■□□ 2.55
DDX39A-215	ENST00000590696	AXIN2	Q9Y2T1	843 aa		31.01	■■■□□ 2.55
DDX39A-215	ENST00000590696	COL18A1	P39060	1754 aa		31.01	■■■□□ 2.55
DDX39A-215	ENST00000590696	KCNH5	Q8NCM2	988 aa		31	■■■□□ 2.55
DDX39A-215	ENST00000590696	CARD11	Q9BXL7	1154 aa		31	■■■□□ 2.55
DDX39A-215	ENST00000590696	SOX12	O15370	315 aa		30.99	■■■□□ 2.55
DDX39A-215	ENST00000590696	ARHGEF25	Q86VW2	580 aa		30.99	■■■□□ 2.55
DDX39A-215	ENST00000590696	KTN1	Q86UP2	1357 aa	Known RBP	30.99	■■■□□ 2.55
DDX39A-215	ENST00000590696	PARD3	Q8TEW0	1356 aa		30.99	■■■□□ 2.55
DDX39A-215	ENST00000590696	WDR17	Q8IZU2	1322 aa		30.97	■■■□□ 2.55
DDX39A-215	ENST00000590696	SBNO2	Q9Y2G9	1366 aa		30.96	■■■□□ 2.55
DDX39A-215	ENST00000590696	C11orf95	C9JLR9	678 aa	Predicted RBP	30.94	■■■□□ 2.54

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