RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 MON2Q7Z3U7 1717 aa16.7■□□□□ 0.26
LIG3-213ENST00000590630 TMF1P82094 1093 aa16.69■□□□□ 0.26
LIG3-213ENST00000590630 C8orf37Q96NL8 207 aa16.69■□□□□ 0.26
LIG3-213ENST00000590630 ZNF692Q9BU19 519 aaPredicted RBP16.69■□□□□ 0.26
LIG3-213ENST00000590630 CPSF1Q10570 1443 aaKnown RBP16.69■□□□□ 0.26
LIG3-213ENST00000590630 NINLQ9Y2I6 1382 aa16.68■□□□□ 0.26
LIG3-213ENST00000590630 ZNF772Q68DY9 489 aaPredicted RBP16.68■□□□□ 0.26
LIG3-213ENST00000590630 NRKQ7Z2Y5 1582 aa16.68■□□□□ 0.26
LIG3-213ENST00000590630 HAP1P54257 671 aaPredicted RBP16.67■□□□□ 0.26
LIG3-213ENST00000590630 CDCA8Q53HL2 280 aa16.67■□□□□ 0.26
LIG3-213ENST00000590630 AFF2P51816 1311 aa16.67■□□□□ 0.26
LIG3-213ENST00000590630 PHRF1Q9P1Y6 1649 aaKnown RBP16.67■□□□□ 0.26
LIG3-213ENST00000590630 EIF4G2P78344 907 aaKnown RBP eCLIP16.66■□□□□ 0.26
LIG3-213ENST00000590630 SSH2Q76I76 1423 aa16.66■□□□□ 0.26
LIG3-213ENST00000590630 CABLES1Q8TDN4 633 aa16.66■□□□□ 0.26
LIG3-213ENST00000590630 NGLY1Q96IV0 654 aa16.66■□□□□ 0.26
LIG3-213ENST00000590630 ABTB2Q8N961 1025 aa16.65■□□□□ 0.26
LIG3-213ENST00000590630 TMC1Q8TDI8 760 aa16.65■□□□□ 0.26
LIG3-213ENST00000590630 CD163L1Q9NR16 1453 aa16.65■□□□□ 0.26
LIG3-213ENST00000590630 PIK3C2AO00443 1686 aa16.65■□□□□ 0.26
LIG3-213ENST00000590630 KTN1Q86UP2 1357 aaKnown RBP16.64■□□□□ 0.26
LIG3-213ENST00000590630 ILDR2Q71H61 639 aa16.64■□□□□ 0.25
LIG3-213ENST00000590630 FNBP4Q8N3X1 1017 aaPredicted RBP16.64■□□□□ 0.25
LIG3-213ENST00000590630 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.64■□□□□ 0.25
LIG3-213ENST00000590630 NWD2Q9ULI1 1742 aa16.64■□□□□ 0.25
LIG3-213ENST00000590630 PLCH1Q4KWH8 1693 aa16.63■□□□□ 0.25
LIG3-213ENST00000590630 PLEKHG5O94827 1062 aa16.63■□□□□ 0.25
LIG3-213ENST00000590630 POTEAQ6S8J7 498 aa16.63■□□□□ 0.25
LIG3-213ENST00000590630 HDGFL2Q7Z4V5 671 aaPredicted RBP16.63■□□□□ 0.25
LIG3-213ENST00000590630 SLC12A5Q9H2X9 1139 aa16.63■□□□□ 0.25
LIG3-213ENST00000590630 TERF2IPQ9NYB0 399 aa16.63■□□□□ 0.25
LIG3-213ENST00000590630 NLRP13Q86W25 1043 aa16.62■□□□□ 0.25
LIG3-213ENST00000590630 TTC21AQ8NDW8 1320 aa16.62■□□□□ 0.25
LIG3-213ENST00000590630 COL14A1Q05707 1796 aaKnown RBP16.61■□□□□ 0.25
LIG3-213ENST00000590630 HSPA5P11021 654 aaKnown RBP16.61■□□□□ 0.25
LIG3-213ENST00000590630 MYOM1P52179 1685 aa16.61■□□□□ 0.25
LIG3-213ENST00000590630 USP19O94966 1318 aa16.61■□□□□ 0.25
LIG3-213ENST00000590630 TTC21BQ7Z4L5 1316 aa16.61■□□□□ 0.25
LIG3-213ENST00000590630 A0A1W2PP64 1363 aa16.61■□□□□ 0.25
LIG3-213ENST00000590630 EDC4Q6P2E9 1401 aaKnown RBP16.61■□□□□ 0.25
LIG3-213ENST00000590630 SLIT2O94813 1529 aa16.6■□□□□ 0.25
LIG3-213ENST00000590630 NUTM2GQ5VZR2 741 aa16.6■□□□□ 0.25
LIG3-213ENST00000590630 USP21Q9UK80 565 aa16.6■□□□□ 0.25
LIG3-213ENST00000590630 BCL9LQ86UU0 1499 aa16.6■□□□□ 0.25
LIG3-213ENST00000590630 USP54Q70EL1 1684 aa16.59■□□□□ 0.25
LIG3-213ENST00000590630 ANKRD36BQ8N2N9 1353 aa16.59■□□□□ 0.25
LIG3-213ENST00000590630 SLIT3O75094 1523 aa16.59■□□□□ 0.25
LIG3-213ENST00000590630 NLRP6P59044 892 aa16.58■□□□□ 0.24
LIG3-213ENST00000590630 FAM83GA6ND36 823 aa16.57■□□□□ 0.24
LIG3-213ENST00000590630 QTRT2Q9H974 415 aaKnown RBP16.57■□□□□ 0.24
LIG3-213ENST00000590630 TRPC5Q9UL62 973 aaPredicted RBP16.57■□□□□ 0.24
LIG3-213ENST00000590630 NRAPQ86VF7 1730 aa16.56■□□□□ 0.24
LIG3-213ENST00000590630 ATRNO75882 1429 aa16.56■□□□□ 0.24
LIG3-213ENST00000590630 KIAA0232Q92628 1395 aa16.56■□□□□ 0.24
LIG3-213ENST00000590630 CPDO75976 1380 aa16.55■□□□□ 0.24
LIG3-213ENST00000590630 GCP02774 474 aa16.55■□□□□ 0.24
LIG3-213ENST00000590630 RXRBP28702 533 aa16.55■□□□□ 0.24
LIG3-213ENST00000590630 UNC5CLQ8IV45 518 aa16.55■□□□□ 0.24
LIG3-213ENST00000590630 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.55■□□□□ 0.24
LIG3-213ENST00000590630 PRDM11Q9NQV5 511 aa16.55■□□□□ 0.24
LIG3-213ENST00000590630 CDK12Q9NYV4 1490 aaPredicted RBP16.54■□□□□ 0.24
LIG3-213ENST00000590630 USP31Q70CQ4 1352 aa16.54■□□□□ 0.24
LIG3-213ENST00000590630 RBM6P78332 1123 aaKnown RBP16.54■□□□□ 0.24
LIG3-213ENST00000590630 ZC3H6P61129 1189 aaKnown RBP16.53■□□□□ 0.24
LIG3-213ENST00000590630 KCNH5Q8NCM2 988 aa16.52■□□□□ 0.24
LIG3-213ENST00000590630 BTG4Q9NY30 223 aa16.52■□□□□ 0.24
LIG3-213ENST00000590630 LMO7Q8WWI1 1683 aa16.52■□□□□ 0.23
LIG3-213ENST00000590630 KIF20BQ96Q89 1820 aa16.52■□□□□ 0.23
LIG3-213ENST00000590630 NME9Q86XW9 330 aa16.51■□□□□ 0.23
LIG3-213ENST00000590630 NFAT5O94916 1531 aa16.5■□□□□ 0.23
LIG3-213ENST00000590630 OVOS2A0A0J9YW53 1432 aa16.5■□□□□ 0.23
LIG3-213ENST00000590630 OVOS2Q6IE36 1432 aa16.5■□□□□ 0.23
LIG3-213ENST00000590630 GLI3P10071 1580 aa16.49■□□□□ 0.23
LIG3-213ENST00000590630 CHRNA2Q15822 529 aa16.49■□□□□ 0.23
LIG3-213ENST00000590630 VPS72Q15906 364 aa16.49■□□□□ 0.23
LIG3-213ENST00000590630 GJD4Q96KN9 370 aaPredicted RBP16.49■□□□□ 0.23
LIG3-213ENST00000590630 POLR3GLQ9BT43 218 aa16.49■□□□□ 0.23
LIG3-213ENST00000590630 LTN1O94822 1766 aa16.49■□□□□ 0.23
LIG3-213ENST00000590630 COL18A1P39060 1754 aa16.49■□□□□ 0.23
LIG3-213ENST00000590630 SOCS7O14512 581 aa16.48■□□□□ 0.23
LIG3-213ENST00000590630 CAMTA1Q9Y6Y1 1673 aa16.48■□□□□ 0.23
LIG3-213ENST00000590630 ABCC6O95255 1503 aa16.48■□□□□ 0.23
LIG3-213ENST00000590630 AATKQ6ZMQ8 1374 aa16.48■□□□□ 0.23
LIG3-213ENST00000590630 RGS12O14924 1447 aa16.47■□□□□ 0.23
LIG3-213ENST00000590630 ZRANB1Q9UGI0 708 aa16.47■□□□□ 0.23
LIG3-213ENST00000590630 EP400Q96L91 3159 aa16.46■□□□□ 0.23
LIG3-213ENST00000590630 C11orf95C9JLR9 678 aaPredicted RBP16.46■□□□□ 0.23
LIG3-213ENST00000590630 ARHGEF25Q86VW2 580 aa16.46■□□□□ 0.23
LIG3-213ENST00000590630 RGPD5Q99666 1765 aa16.46■□□□□ 0.22
LIG3-213ENST00000590630 NSD3Q9BZ95 1437 aa16.45■□□□□ 0.22
LIG3-213ENST00000590630 SOX12O15370 315 aa16.45■□□□□ 0.22
LIG3-213ENST00000590630 COG3Q96JB2 828 aa16.45■□□□□ 0.22
LIG3-213ENST00000590630 CARD14Q9BXL6 1004 aa16.45■□□□□ 0.22
LIG3-213ENST00000590630 CCDC9Q9Y3X0 531 aaKnown RBP16.45■□□□□ 0.22
LIG3-213ENST00000590630 KIF7Q2M1P5 1343 aa16.45■□□□□ 0.22
LIG3-213ENST00000590630 COL5A2P05997 1499 aaPredicted RBP16.44■□□□□ 0.22
LIG3-213ENST00000590630 FYB1O15117 783 aa16.44■□□□□ 0.22
LIG3-213ENST00000590630 ZBTB7CA1YPR0 619 aa16.43■□□□□ 0.22
LIG3-213ENST00000590630 EVA1CP58658 441 aa16.43■□□□□ 0.22
LIG3-213ENST00000590630 STRN4Q9NRL3 753 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms