RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 NALCNQ8IZF0 1738 aa16.47■□□□□ 0.23
SMAD4-211ENST00000590499 DCCP43146 1447 aa16.46■□□□□ 0.23
SMAD4-211ENST00000590499 C19orf44Q9H6X5 657 aa16.45■□□□□ 0.22
SMAD4-211ENST00000590499 ROBO2Q9HCK4 1378 aa16.45■□□□□ 0.22
SMAD4-211ENST00000590499 KNDC1Q76NI1 1749 aa16.45■□□□□ 0.22
SMAD4-211ENST00000590499 LAMC1P11047 1609 aa16.45■□□□□ 0.22
SMAD4-211ENST00000590499 ADGRL3Q9HAR2 1447 aa16.45■□□□□ 0.22
SMAD4-211ENST00000590499 TECPR2O15040 1411 aa16.44■□□□□ 0.22
SMAD4-211ENST00000590499 SLAIN2Q9P270 581 aa16.43■□□□□ 0.22
SMAD4-211ENST00000590499 C14orf37Q86TY3 774 aa16.42■□□□□ 0.22
SMAD4-211ENST00000590499 CADPS2Q86UW7 1296 aa16.42■□□□□ 0.22
SMAD4-211ENST00000590499 LRPPRCP42704 1394 aaKnown RBP16.41■□□□□ 0.22
SMAD4-211ENST00000590499 DHX57Q6P158 1386 aaKnown RBP16.4■□□□□ 0.22
SMAD4-211ENST00000590499 MST1RQ04912 1400 aa16.4■□□□□ 0.22
SMAD4-211ENST00000590499 C14orf93Q9H972 538 aaKnown RBP16.4■□□□□ 0.22
SMAD4-211ENST00000590499 ATF3P18847 181 aa16.39■□□□□ 0.21
SMAD4-211ENST00000590499 C3orf67Q6ZVT6 689 aa16.39■□□□□ 0.21
SMAD4-211ENST00000590499 ABCC11Q96J66 1382 aa16.38■□□□□ 0.21
SMAD4-211ENST00000590499 YTHDC2Q9H6S0 1430 aaKnown RBP16.38■□□□□ 0.21
SMAD4-211ENST00000590499 EMP3P54852 163 aa16.38■□□□□ 0.21
SMAD4-211ENST00000590499 ADGRB1O14514 1584 aa16.38■□□□□ 0.21
SMAD4-211ENST00000590499 AHDC1Q5TGY3 1603 aaPredicted RBP16.37■□□□□ 0.21
SMAD4-211ENST00000590499 PHLPP1O60346 1717 aa16.37■□□□□ 0.21
SMAD4-211ENST00000590499 TMEM132EQ6IEE7 984 aa16.37■□□□□ 0.21
SMAD4-211ENST00000590499 L3MBTL3Q96JM7 780 aaPredicted RBP16.37■□□□□ 0.21
SMAD4-211ENST00000590499 MED1Q15648 1581 aaPredicted RBP16.37■□□□□ 0.21
SMAD4-211ENST00000590499 COL16A1Q07092 1604 aaPredicted RBP16.37■□□□□ 0.21
SMAD4-211ENST00000590499 POTEB3A0JP26 581 aa16.36■□□□□ 0.21
SMAD4-211ENST00000590499 CFAP70Q5T0N1 1121 aa16.36■□□□□ 0.21
SMAD4-211ENST00000590499 POTEBQ6S5H4 581 aa16.36■□□□□ 0.21
SMAD4-211ENST00000590499 CIZ1Q9ULV3 898 aaPredicted RBP16.36■□□□□ 0.21
SMAD4-211ENST00000590499 CDC42BPGQ6DT37 1551 aa16.35■□□□□ 0.21
SMAD4-211ENST00000590499 TRIM26Q12899 539 aaPredicted RBP16.35■□□□□ 0.21
SMAD4-211ENST00000590499 MKRN3Q13064 507 aaKnown RBP16.35■□□□□ 0.21
SMAD4-211ENST00000590499 ZNF467Q7Z7K2 595 aaPredicted RBP16.35■□□□□ 0.21
SMAD4-211ENST00000590499 STAC3Q96MF2 364 aa16.35■□□□□ 0.21
SMAD4-211ENST00000590499 DCAF11Q8TEB1 546 aa16.34■□□□□ 0.21
SMAD4-211ENST00000590499 NHSL1Q5SYE7 1610 aa16.34■□□□□ 0.21
SMAD4-211ENST00000590499 BRINP3Q76B58 766 aa16.33■□□□□ 0.2
SMAD4-211ENST00000590499 KRTAP3-3Q9BYR6 98 aa16.33■□□□□ 0.2
SMAD4-211ENST00000590499 KRTAP3-2Q9BYR7 98 aa16.33■□□□□ 0.2
SMAD4-211ENST00000590499 STK26Q9P289 416 aa16.33■□□□□ 0.2
SMAD4-211ENST00000590499 DISP3Q9P2K9 1392 aa16.33■□□□□ 0.2
SMAD4-211ENST00000590499 PLEKHH1Q9ULM0 1364 aa16.33■□□□□ 0.2
SMAD4-211ENST00000590499 DLC1Q96QB1 1528 aa16.33■□□□□ 0.2
SMAD4-211ENST00000590499 C1orf167Q5SNV9 1468 aa16.32■□□□□ 0.2
SMAD4-211ENST00000590499 SIRT1Q96EB6 747 aa16.32■□□□□ 0.2
SMAD4-211ENST00000590499 CHRM1P11229 460 aaPredicted RBP16.31■□□□□ 0.2
SMAD4-211ENST00000590499 GOLGA2Q08379 1002 aa16.31■□□□□ 0.2
SMAD4-211ENST00000590499 KDM2AQ9Y2K7 1162 aa16.31■□□□□ 0.2
SMAD4-211ENST00000590499 KIAA1210Q9ULL0 1709 aa16.31■□□□□ 0.2
SMAD4-211ENST00000590499 WAPLQ7Z5K2 1190 aa16.3■□□□□ 0.2
SMAD4-211ENST00000590499 HS3ST6Q96QI5 342 aa16.3■□□□□ 0.2
SMAD4-211ENST00000590499 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.29■□□□□ 0.26e-8■□□□□ 8.4
SMAD4-211ENST00000590499 FMN2Q9NZ56 1722 aa16.28■□□□□ 0.2
SMAD4-211ENST00000590499 SHPRHQ149N8 1683 aa16.27■□□□□ 0.19
SMAD4-211ENST00000590499 JCADQ9P266 1359 aa16.26■□□□□ 0.19
SMAD4-211ENST00000590499 ARHGEF28Q8N1W1 1705 aaKnown RBP16.26■□□□□ 0.19
SMAD4-211ENST00000590499 FAM205CA6NFA0 338 aa16.26■□□□□ 0.19
SMAD4-211ENST00000590499 ADGRB2O60241 1585 aa16.26■□□□□ 0.19
SMAD4-211ENST00000590499 SIN3AQ96ST3 1273 aa16.25■□□□□ 0.19
SMAD4-211ENST00000590499 PSEN1P49768 467 aa16.24■□□□□ 0.19
SMAD4-211ENST00000590499 PRAM1Q96QH2 718 aa16.24■□□□□ 0.19
SMAD4-211ENST00000590499 ORAI2Q96SN7 254 aa16.23■□□□□ 0.19
SMAD4-211ENST00000590499 L3MBTL2Q969R5 705 aa16.22■□□□□ 0.19
SMAD4-211ENST00000590499 RGPD8O14715 1765 aaPredicted RBP16.21■□□□□ 0.19
SMAD4-211ENST00000590499 ILDR2Q71H61 639 aa16.21■□□□□ 0.19
SMAD4-211ENST00000590499 DDX17Q92841 729 aaKnown RBP16.21■□□□□ 0.19
SMAD4-211ENST00000590499 TRAK1Q9UPV9 953 aa16.21■□□□□ 0.19
SMAD4-211ENST00000590499 SOS2Q07890 1332 aaPredicted RBP16.19■□□□□ 0.18
SMAD4-211ENST00000590499 LRP6O75581 1613 aa16.19■□□□□ 0.18
SMAD4-211ENST00000590499 USP32Q8NFA0 1604 aa16.19■□□□□ 0.18
SMAD4-211ENST00000590499 KIF1AQ12756 1690 aa16.19■□□□□ 0.18
SMAD4-211ENST00000590499 DPY19L2Q6NUT2 758 aa16.19■□□□□ 0.18
SMAD4-211ENST00000590499 TRPM1Q7Z4N2 1603 aa16.19■□□□□ 0.18
SMAD4-211ENST00000590499 SPATA31A6Q5VVP1 1343 aa16.19■□□□□ 0.18
SMAD4-211ENST00000590499 PXDNQ92626 1479 aa16.18■□□□□ 0.18
SMAD4-211ENST00000590499 SAFB2Q14151 953 aaKnown RBP eCLIP16.18■□□□□ 0.18
SMAD4-211ENST00000590499 POGKQ9P215 609 aa16.18■□□□□ 0.18
SMAD4-211ENST00000590499 NEUROD1Q13562 356 aa16.17■□□□□ 0.18
SMAD4-211ENST00000590499 NBPF1Q3BBV0 1214 aa16.17■□□□□ 0.18
SMAD4-211ENST00000590499 PNPLA6Q8IY17 1366 aa16.16■□□□□ 0.18
SMAD4-211ENST00000590499 NUTM2FA1L443 756 aa16.16■□□□□ 0.18
SMAD4-211ENST00000590499 ESCO1Q5FWF5 840 aa16.16■□□□□ 0.18
SMAD4-211ENST00000590499 LRRC59Q96AG4 307 aaKnown RBP16.16■□□□□ 0.18
SMAD4-211ENST00000590499 RGS17Q9UGC6 210 aaPredicted RBP16.16■□□□□ 0.18
SMAD4-211ENST00000590499 ANKARQ7Z5J8 1434 aa16.16■□□□□ 0.18
SMAD4-211ENST00000590499 NPHP3Q7Z494 1330 aa16.15■□□□□ 0.18
SMAD4-211ENST00000590499 TULP4Q9NRJ4 1543 aa16.14■□□□□ 0.18
SMAD4-211ENST00000590499 COL22A1Q8NFW1 1626 aaPredicted RBP16.14■□□□□ 0.17
SMAD4-211ENST00000590499 MINK1Q8N4C8 1332 aaPredicted RBP16.14■□□□□ 0.17
SMAD4-211ENST00000590499 HOXB3P14651 431 aaPredicted RBP16.13■□□□□ 0.17
SMAD4-211ENST00000590499 HIRIP3Q9BW71 556 aaPredicted RBP16.13■□□□□ 0.17
SMAD4-211ENST00000590499 FOXO3O43524 673 aa16.12■□□□□ 0.17
SMAD4-211ENST00000590499 WASLO00401 505 aaPredicted RBP16.11■□□□□ 0.17
SMAD4-211ENST00000590499 PDAP1Q13442 181 aaKnown RBP16.11■□□□□ 0.17
SMAD4-211ENST00000590499 PRR36Q9H6K5 1346 aa16.11■□□□□ 0.17
SMAD4-211ENST00000590499 EIF3AQ14152 1382 aaKnown RBP16.11■□□□□ 0.17
SMAD4-211ENST00000590499 PHF8Q9UPP1 1060 aa16.1■□□□□ 0.17
SMAD4-211ENST00000590499 GPRASP1Q5JY77 1395 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms